View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14717_low_3 (Length: 466)
Name: NF14717_low_3
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14717_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 56276095 - 56275653
Alignment:
| Q |
13 |
aatataagttggtgagataagtttttaccaaatatctccaatcaagtcaaataagtgtataacttgtcgtgtatagtcttctcgttcttgagatttcgtg |
112 |
Q |
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| T |
56276095 |
aatataagttggtgagataagtttttaccaaatatctccaatcaagtcaaataagtgtataacttgtcgtgtatagtcttctcgttcttgagatttcgtg |
56275996 |
T |
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| Q |
113 |
tgctttgtgaactagagtaggttgttacagatattaaattcattttctagagagtttgttttatgacttgtacgtaccaaattataactttacaaaaaac |
212 |
Q |
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| T |
56275995 |
tgctttgtgaactagagtaggttgttatagatattaaattaattttctagagagtttgttttatgacttgtacgtaccaaattataactttacaaaaaac |
56275896 |
T |
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| Q |
213 |
tatatcctttcttttgaatacactaacaaactcctatcatgttacg-ttcttt--tagagcaaaactaacgattacaatatgataatgcaaaatgtctag |
309 |
Q |
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| T |
56275895 |
tatatcctttcttttgaatacactaacaaactcctatcatgttacgcttcttttctggagcaaaagtaacgattacaatatgataatgtaaaatgtccgg |
56275796 |
T |
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| Q |
310 |
tgaaagtaaacttaagactattgacaattaatgtattttttaggatcatttcttagtaattcatcttataaagattattccatgttattaaatcataaat |
409 |
Q |
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| T |
56275795 |
tgaaagtaaccttaagaccattgacaattaatgtattttttaggatcatttcttagtaattcatcttataaagattattccatgttattagatcataaat |
56275696 |
T |
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| Q |
410 |
gtctaatgaaataaa--gagttggttgtttatcggcaaaagta |
450 |
Q |
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| T |
56275695 |
gtctaatggaataaaccgagttggttgtttatcggcaaaagta |
56275653 |
T |
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