View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14717_low_5 (Length: 401)
Name: NF14717_low_5
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14717_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 114 - 346
Target Start/End: Complemental strand, 41106896 - 41106663
Alignment:
| Q |
114 |
ggggaatccccacaggggtccgctatgataaatcttcattgacatcct-actcatgcattgtatgatttagtttatttgtcttttatgtaaatagtagaa |
212 |
Q |
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| T |
41106896 |
ggggaattcccacaggggtccgctatggtaaatcttcattgacatccttactcatgcattgcatgatttagtttatttgtcttttatataaatagtagaa |
41106797 |
T |
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| Q |
213 |
tcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatctatccatccagaataatacatcttactattgttgaacga |
312 |
Q |
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| T |
41106796 |
tcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatctatccatccagaataatacatcttactattgttgaacga |
41106697 |
T |
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| Q |
313 |
acgatgtaacttacttatattaatactaatataa |
346 |
Q |
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| T |
41106696 |
acgatgtaacttacttatattaatactaatataa |
41106663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 41106961 - 41106891
Alignment:
| Q |
17 |
acttccacgatcctcgtcctcgatgtgctcttgtgggaacattcttccccatctctgtccttgcaggggaa |
87 |
Q |
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| T |
41106961 |
acttccatgatcctcgtcctcgatgtgctcttgtgggaacattcttccccatctctgtccttgcaggggaa |
41106891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 29456764 - 29456836
Alignment:
| Q |
201 |
taaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatc |
273 |
Q |
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| T |
29456764 |
taaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttgtctactagataacacatc |
29456836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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