View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14717_low_6 (Length: 335)
Name: NF14717_low_6
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14717_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 7052327 - 7052040
Alignment:
| Q |
18 |
aataatacagttgtcgtgtaacttttcaaagttggctcctataaacaatacaattatttctaagatatcattgtaatactaattaaaatattacaaactt |
117 |
Q |
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| T |
7052327 |
aataatacagttgtcgtgtaacttttcaaagttggctcctataaacaatacaattatttctaagatatcattgtaatactaattaaaatattacaaactt |
7052228 |
T |
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| Q |
118 |
gtgaaggtgcatgacagtcagtgaggaaaagaacgaaattgggaatcttattatatgaaacatcatgtgcgtttatgtgttcaatgagtagaaaaggatt |
217 |
Q |
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| T |
7052227 |
gtgaaggtgcatgacagtcagtgaggaaaagaacgaaattgggaatcttattatatgaaacatcatgtgcgtttatgtgttcaatgagtagaaaaggatt |
7052128 |
T |
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| Q |
218 |
tcactttcaaaggtgtggcttaatcaacggaatttgttgtcgttcttttcaaaggttggctccactgaaccatgataattagtataat |
305 |
Q |
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| T |
7052127 |
tcactttcaaaggtgtggcttaatcaacggaatttgttgtcgttcttttcaaaggttggctccactgaaccatgataattagtataat |
7052040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 16853300 - 16853340
Alignment:
| Q |
27 |
gttgtcgtgtaacttttcaaagttggctcctataaacaata |
67 |
Q |
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| T |
16853300 |
gttgtcatgtaacttttcaaagttggctcctataaacaata |
16853340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 16790619 - 16790665
Alignment:
| Q |
259 |
gttcttttcaaaggttggctccactgaaccatgataattagtataat |
305 |
Q |
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| T |
16790619 |
gttctttccaaaggttagttccactaaaccatgataattagtataat |
16790665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 16988549 - 16988590
Alignment:
| Q |
26 |
agttgtcgtgtaacttttcaaagttggctcctataaacaata |
67 |
Q |
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| T |
16988549 |
agttctcgtgtaacttttcaaagttggctgctctaaacaata |
16988590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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