View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14718_high_1 (Length: 478)
Name: NF14718_high_1
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 5391411 - 5390961
Alignment:
| Q |
18 |
cctatttcgtaccataccattactgaatctatcttctcttcgagatgtgtttcgtacaagcactgcagccacagtgtggtggcgtaactttccagaacat |
117 |
Q |
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| T |
5391411 |
cctatttcgtaccataccattactgaatctatcttctcttcgagatgtgtttcgtacaagcactgcagccacagtgtggtggcgtaactttccagaacat |
5391312 |
T |
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| Q |
118 |
cgaatgtggaacttcgacggcggagaagttaggaattgttaacttccgccatagattcaatgccgttgaactacgtcgttgtcgtaaaagtatgttgaaa |
217 |
Q |
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| T |
5391311 |
cgaatgtggaacttcgacggtggagaagttaggaattgttaacttccgccatagattcaatgccgttgaactacgtcgttgtcgtaaaagtatgttgaaa |
5391212 |
T |
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| Q |
218 |
ccaatcatggcgcaggacgagcgtgaatcatctattgccgatgacgataacagaattccgaaatacaagggaatttctgtgaataaaaggaactgtgtta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391211 |
ccaatcatggcgcaggacgagcgtgaatcatctattgccgatgacgataacagaattccgaaatacaagggaatttctgtgaataaaaggaactgtgtta |
5391112 |
T |
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| Q |
318 |
aaaatgaacctgattcatctttcattgatcattctgcagcattttctggtactttattt-ttcaattatattgtttttgaataagttttctcaattaccg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5391111 |
aaaatgaacctgattcatctttcattgatcattctgcagcattttctggtactttatttattcaattatattgtttttgaataagttttctcaattaccg |
5391012 |
T |
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| Q |
417 |
agttcaattccaatcaaatgtgtctgatgaataaggaatattcctatgctt |
467 |
Q |
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| T |
5391011 |
agttcaattccaatcaaatgtgtctgatgaataaggaatattcctatgctt |
5390961 |
T |
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