View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14718_high_12 (Length: 245)

Name: NF14718_high_12
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14718_high_12
NF14718_high_12
[»] chr4 (11 HSPs)
chr4 (1-240)||(21201682-21201921)
chr4 (1-237)||(27258825-27259062)
chr4 (62-237)||(44344264-44344439)
chr4 (62-240)||(35945098-35945276)
chr4 (101-239)||(19940669-19940807)
chr4 (5-47)||(40088507-40088549)
chr4 (101-239)||(4225600-4225739)
chr4 (202-240)||(10179683-10179721)
chr4 (78-160)||(40088425-40088507)
chr4 (14-52)||(44344428-44344466)
chr4 (7-52)||(2916404-2916449)
[»] chr5 (1 HSPs)
chr5 (101-240)||(16511348-16511487)
[»] chr7 (10 HSPs)
chr7 (101-240)||(16803799-16803937)
chr7 (53-173)||(18152097-18152215)
chr7 (101-239)||(45956898-45957036)
chr7 (102-158)||(29541946-29542002)
chr7 (5-51)||(18152069-18152115)
chr7 (101-239)||(26572435-26572575)
chr7 (201-240)||(29541885-29541924)
chr7 (101-239)||(984499-984638)
chr7 (70-117)||(22068347-22068394)
chr7 (102-239)||(23103919-23104057)
[»] chr1 (5 HSPs)
chr1 (101-240)||(21502170-21502307)
chr1 (62-240)||(52973443-52973621)
chr1 (105-230)||(15244538-15244663)
chr1 (106-230)||(6242907-6243031)
chr1 (103-154)||(15732090-15732141)
[»] chr8 (3 HSPs)
chr8 (101-230)||(19452295-19452423)
chr8 (101-230)||(19528653-19528781)
chr8 (101-147)||(29453713-29453759)
[»] scaffold0316 (1 HSPs)
scaffold0316 (101-240)||(19481-19620)
[»] chr3 (2 HSPs)
chr3 (101-230)||(862720-862849)
chr3 (202-234)||(4287494-4287526)
[»] chr2 (5 HSPs)
chr2 (127-240)||(25894652-25894765)
chr2 (5-50)||(14918321-14918366)
chr2 (12-46)||(18609935-18609969)
chr2 (101-179)||(27467084-27467162)
chr2 (8-49)||(42296101-42296142)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21201921 - 21201682
Alignment:
Q  1 ttgcactaaccacttttgtggttagggaatgattagataataattatgtttgttagataattaattatgtttgcaagtttagttagtcacaaccttcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21201921 ttgcactaaccacttttgtggttagggaatgattagataataattatgtttgttagataattaattatgtttgcaagtttagttagttacaaccttcaaa 21201822  T
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21201821 gcttctttcaaacaaaccgttttaactcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccatgagactgagagggtatta 21201722  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     |||||||||||||||||||||||||||||||||||||||    
T  21201721 gaatggaacatgtttgtttgatatgagttagtccctatgc 21201682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 27259062 - 27258825
Alignment:
Q  1 ttgcactaaccactttt-gtggttagggaatgattagataataattatgtttgttagataattaattatgtttgcaagtttagttagtcacaaccttcaa 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  27259062 ttgcactaaccactttttgtggttagggaatgattagataataattatgtttgttagataattaattatgtttgcaagtttagtttgttacaaccttcaa 27258963  T
Q  100 agcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatt 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||     
T  27258962 agcttctttcaaacaaacagttttaactcaaaatctttgaaagtaaaactcggtctcttttgctttcaatgttatagttccacgagactgagaaggtatc 27258863  T
Q  200 aaaatggaacatgtttgtttgatatgagttagtcccta 237  Q
    | ||||||||||||||||||||||||||||||||||||    
T  27258862 agaatggaacatgtttgtttgatatgagttagtcccta 27258825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 44344439 - 44344264
Alignment:
Q  62 taattatgtttgcaagtttagttagtcacaaccttcaaagcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttg 161  Q
    |||||||||||||||||| | || || |||||||| ||| |||||||||||||||  ||||||| | ||||| ||||||||||||||| |||||||||||    
T  44344439 taattatgtttgcaagttcaatttgttacaacctttaaatcttctttcaaacaaattgttttaacttaaaatatttgaaagtaaaacttgatctcttttg 44344340  T
Q  162 ctttcaatgttaaagttccaagagactgagagggtattaaaatggaacatgtttgtttgatatgagttagtcccta 237  Q
    ||||  |||||| ||||||   |||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  44344339 cttttgatgttatagttcctctagaccgagagggtatgagaatggaacatgtttgtttgatatgagttagtcccta 44344264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 35945098 - 35945276
Alignment:
Q  62 taattatgtttgcaagtttagttagtcacaaccttcaaagcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttg 161  Q
    ||||||||||||||||||||||| || | ||| || |||| ||||||||||||||| | ||| | ||||||| ||||||||||||||| ||||| |||||    
T  35945098 taattatgtttgcaagtttagtttgttataacttttaaagtttctttcaaacaaactgatttcactcaaaatatttgaaagtaaaacttgatctattttg 35945197  T
Q  162 ctttcaatgttaaagttccaagagactgagagggtattaaaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     |||||||  |  ||||||  ||||| |||||||| |   |||| ||||||||||||| | |||||||||||| |||||    
T  35945198 atttcaatactttagttccctgagaccgagagggtgtgggaatgaaacatgtttgtttaacatgagttagtccatatgc 35945276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 19940807 - 19940669
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||  |||||||||| ||||  |||||| ||||||  || || ||  || ||       
T  19940807 gcttctttcaaataaaccattttaactcaaaatctttgaaagtaaaacatgatctcttttacttttgatgttatagttccctgataccgattggataagg 19940708  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatg 239  Q
     ||   |||||||||||||||||||||||||||||||||    
T  19940707 gaacaaaacatgtttgtttgatatgagttagtccctatg 19940669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 40088549 - 40088507
Alignment:
Q  5 actaaccacttttgtggttagggaatgattagataataattat 47  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  40088549 actaaccacttttgtggttagggaatgattaggtaataattat 40088507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 4225600 - 4225739
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||| |||||||||||  ||||||| |||| |||||| ||||| ||| | |||||||||||||||   ||||| ||||| | ||||| || ||||||       
T  4225600 gcttatttcaaacaaattgttttaactcaagatctttaaaagtgaaaattgatctcttttgctttttgtgttatagttctatgagaccgaaagggtaaat 4225699  T
Q  201 aaatggaacatgtttgtttgatatgagtta-gtccctatg 239  Q
     |||| || ||||||||||||||||| ||| |||||||||    
T  4225700 gaatgaaaaatgtttgtttgatatgacttacgtccctatg 4225739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 10179683 - 10179721
Alignment:
Q  202 aatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  10179683 aatggaaaatgtttgtttgatatgagttagtctctatgc 10179721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 40088507 - 40088425
Alignment:
Q  78 tttagttagtcacaaccttcaaagcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctctttt 160  Q
    ||||||| || |||||||| || | |||||||||| |||| ||||||| | | ||||||| ||||||||||| ||||| ||||    
T  40088507 tttagtttgttacaacctttaatgtttctttcaaataaactgttttaacttacaatctttaaaagtaaaacttgatctttttt 40088425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 44344466 - 44344428
Alignment:
Q  14 ttttgtggttagggaatgattagataataattatgtttg 52  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  44344466 ttttgtggttaggaaatgattaggtaataattatgtttg 44344428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 2916449 - 2916404
Alignment:
Q  7 taaccacttttgtggttagggaatgattagataataattatgtttg 52  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||    
T  2916449 taaccacttttgtggttaggaaatgataaggtaataattatatttg 2916404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 16511348 - 16511487
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||||||||||||||||   ||||| | ||||||||||||| ||||| | || |||||||||||||||||||| ||||||  ||||||| ||||||||      
T  16511348 gcttctttcaaacaaacttatttaactaaaaatctttgaaaataaaatttgacctcttttgctttcaatgttatagttccctgagactgtgagggtatgt 16511447  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     |||  |||||||||||||||||||||||||||| |||||    
T  16511448 gaatacaacatgtttgtttgatatgagttagtccatatgc 16511487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 16803799 - 16803937
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||||||||| |  |||| ||||||||||||||||||||||| |||||||||| ||||||||| || | ||||  || ||  ||||||||||     
T  16803799 gcttctttcaaacaaactgaattaactcaaaatctttgaaagtaaaacttgatctcttttactttcaatgctatatttccttgataccaagagggtattg 16803898  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     |||||||||| |||||||||||||| ||||||| |||||    
T  16803899 gaatggaacat-tttgtttgatatgacttagtccatatgc 16803937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 18152097 - 18152215
Alignment:
Q  53 ttagataattaattatgtttgcaagtttagttagtcacaaccttcaaagcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcga 152  Q
    ||||||||| |||||||||| |||||| |||| || |||||||| |||||||||||||||||||  ||||||| | ||||||||||||||||||||  ||    
T  18152097 ttagataat-aattatgttttcaagttcagtttgttacaacctt-aaagcttctttcaaacaaagtgttttaaataaaaatctttgaaagtaaaacatga 18152194  T
Q  153 tctcttttgctttcaatgtta 173  Q
    |||||||| |||| |||||||    
T  18152195 tctcttttacttttaatgtta 18152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 45956898 - 45957036
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||||||||| | |||||  ||||||||||  |||||||| | ||||||||||  ||  ||||||| |||||| ||||||  | |||||||      
T  45956898 gcttctttcaaacaaactgatttaatgcaaaatctttagaagtaaaaattgatctcttttagttcaaatgttatagttcccagagaccaaaagggtatag 45956997  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatg 239  Q
     ||||||||||||||||||||||||| || ||| |||||    
T  45956998 gaatggaacatgtttgtttgatatgaatttgtctctatg 45957036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 29542002 - 29541946
Alignment:
Q  102 cttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctctt 158  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||    
T  29542002 cttctttcaaacaaactgttttaactcaaaatctttaaaagtaaaacttgatctctt 29541946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 18152069 - 18152115
Alignment:
Q  5 actaaccacttttgtggttagggaatgattagataataattatgttt 51  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  18152069 actaaccacttttgtggctaaggaatgattagataataattatgttt 18152115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 26572575 - 26572435
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatct-cttttgctttcaatgttaaagttccaagagactgagagggtatt 199  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||| |||||  ||||  |||| ||||  |||||| |||| |  || || || |||||||     
T  26572575 gcttctttcaaacaaaatgttttaactcaaaatctttaaaagtgaaacttaatctattttttcttttgatgttatagtttcgtgacaccgatagggtatg 26572476  T
Q  200 aaaatggaacatgtttgtttgatatgagtt-agtccctatg 239  Q
    | |||| || |||||||||||||||||||| ||||||||||    
T  26572475 agaatgaaaaatgtttgtttgatatgagttaagtccctatg 26572435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 29541924 - 29541885
Alignment:
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29541924 aaatggaaaatgtttgtttgatatgagttagtccctatgc 29541885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 984499 - 984638
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||||||| |||||||   |||||| |||||||||||| |||| |||||| ||||||||| ||||  ||| || ||||||   | || || ||||| |      
T  984499 gcttcttttaaacaaatgattttaactcaaaatctttgtaagtgaaactcaatctcttttacttttgatgctatagttccctaaaaccgaaagggtgtgt 984598  T
Q  201 aaatggaacatgtttgtttgatatgagtta-gtccctatg 239  Q
     ||| ||| ||||||||||||||||||||| |||||||||    
T  984599 gaattgaaaatgtttgtttgatatgagttacgtccctatg 984638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 22068394 - 22068347
Alignment:
Q  70 tttgcaagtttagttagtcacaaccttcaaagcttctttcaaacaaac 117  Q
    ||||||||||||||| || |||||||| ||||||||||| ||||||||    
T  22068394 tttgcaagtttagtttgttacaaccttaaaagcttcttttaaacaaac 22068347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 23103919 - 23104057
Alignment:
Q  102 cttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtattaa 201  Q
    |||||||||||||||  | ||||| |||||||||||||| ||||||||  ||||||| | | |  |||  || ||||||  ||| | || |||||||       
T  23103919 cttctttcaaacaaattgatttaactcaaaatctttgaacgtaaaacttaatctcttctacctctaattctatagttccctgaggccgatagggtatggg 23104018  T
Q  202 aatggaaca-tgtttgtttgatatgagttagtccctatg 239  Q
    ||||||||| | |||||||||||||||||||||| ||||    
T  23104019 aatggaacattttttgtttgatatgagttagtccatatg 23104057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 21502170 - 21502307
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||| ||||| | ||||| ||||  ||||||||||||||||| |||||||| | |||||||||||| ||||||   || | || ||||||| |    
T  21502170 gcttctttcaagcaaactgatttaactcaa--tctttgaaagtaaaacttgatctcttcttctttcaatgttatagttccctaagtccgaaagggtataa 21502267  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     ||||||||||| ||||||||||||||||||||| |||||    
T  21502268 gaatggaacatgcttgtttgatatgagttagtccatatgc 21502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 52973621 - 52973443
Alignment:
Q  62 taattatgtttgcaagtttagttagtcacaaccttcaaagcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttg 161  Q
    ||||||||||| ||||||||||| ||  ||| |||  |||||||||||||| |||  ||||||| |||||||||||||||| |||| |  ||||||| |     
T  52973621 taattatgtttacaagtttagtttgttgcaatctttgaagcttctttcaaataaattgttttaactcaaaatctttgaaagaaaaatttaatctcttcta 52973522  T
Q  162 ctttcaatgttaaagttccaagagactgagagggtattaaaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
    |||| ||| ||| |||||    |||| || ||||||| | |||| ||| ||||||||| |||||||||| |||||||||    
T  52973521 cttttaatattatagttctctaagaccgatagggtatgagaatgaaacttgtttgtttaatatgagttaatccctatgc 52973443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 15244538 - 15244663
Alignment:
Q  105 ctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtattaaaat 204  Q
    ||||||||||||| ||||||| | |||||| |||||||| ||||| |||||||||| ||||  || ||| ||||||   | || || || ||||   |||    
T  15244538 ctttcaaacaaactgttttaactaaaaatcattgaaagtgaaacttgatctcttttacttttcattttatagttcctttaaaccgaaagagtatgggaat 15244637  T
Q  205 ggaacatgtttgtttgatatgagtta 230  Q
    |||| |||||||||||||||||||||    
T  15244638 ggaaaatgtttgtttgatatgagtta 15244663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 6242907 - 6243031
Alignment:
Q  106 tttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtattaaaatg 205  Q
    |||||||||||  ||||||| ||||||||||  ||||| |||||  ||||||||| ||||  |||||| |||||   ||||| |  ||| ||| | ||||    
T  6242907 tttcaaacaaattgttttaactcaaaatcttcaaaagtgaaacttaatctcttttactttttatgttatagttctttgagaccggaaggatatgataatg 6243006  T
Q  206 gaacatgtttgtttgatatgagtta 230  Q
    ||| |||||||||||||||||||||    
T  6243007 gaaaatgtttgtttgatatgagtta 6243031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 15732090 - 15732141
Alignment:
Q  103 ttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatc 154  Q
    |||||||||||||||  ||||||  |||||||||||||||||||||| ||||    
T  15732090 ttctttcaaacaaactattttaacccaaaatctttgaaagtaaaacttgatc 15732141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 19452423 - 19452295
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| | |||  |||  |||||| ||||||  ||||| |||||||||| |    
T  19452423 gcttctttcaaacaaactgttttaactcaaaatctttgaaagtgaaacttgatcac-tttattttttatgttatagttccctgagaccgagagggtatca 19452325  T
Q  201 aaatggaacatgtttgtttgatatgagtta 230  Q
    || || || |||||||||||||| ||||||    
T  19452324 aattgtaaaatgtttgtttgataagagtta 19452295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 19528653 - 19528781
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| | |||  |||  |||||| ||||||  ||||| |||||||||| |    
T  19528653 gcttctttcaaacaaactgttttaactcaaaatctttgaaagtgaaacttgatcac-tttattttttatgttatagttccctgagaccgagagggtatca 19528751  T
Q  201 aaatggaacatgtttgtttgatatgagtta 230  Q
    || || || |||||||||||||| ||||||    
T  19528752 aattgtaaaatgtttgtttgataagagtta 19528781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 29453713 - 29453759
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaa 147  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||||    
T  29453713 gcttctttcaaacaaactgttttaatgccaaatctttgaaagtaaaa 29453759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 19481 - 19620
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||| |||||||||||  ||||| | |||||||||||||||  || ||| |||  |||||| ||| ||||||| ||||||  || ||  ||||| ||||     
T  19481 gcttttttcaaacaaattgtttttattcaaaatctttgaaaacaagacttgattacttttgtttttaatgttatagttccctgaaaccaagaggttattg 19580  T
Q  201 aaatggaacatgtttgtttgatatgagttagtccctatgc 240  Q
     ||||||||| ||||||||||||||| || ||||||||||    
T  19581 gaatggaacaagtttgtttgatatgattttgtccctatgc 19620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 862720 - 862849
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtatta 200  Q
    |||| |||||||||||  ||||||| ||||||||||| ||||| ||||| ||||| |||||||||  ||| ||  |||||  || || || | |||||      
T  862720 gcttttttcaaacaaattgttttaactcaaaatctttaaaagtgaaacttgatctattttgctttagatgatattgttccctgaaaccgaaaaggtatag 862819  T
Q  201 aaatggaacatgtttgtttgatatgagtta 230  Q
     ||||||| |||||||||||||||||||||    
T  862820 gaatggaaaatgtttgtttgatatgagtta 862849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 4287526 - 4287494
Alignment:
Q  202 aatggaacatgtttgtttgatatgagttagtcc 234  Q
    |||||||||||||||||||||||||||||||||    
T  4287526 aatggaacatgtttgtttgatatgagttagtcc 4287494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 25894765 - 25894652
Alignment:
Q  127 tcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttccaagagactgagagggtattaaaatggaacatgtttgtttgatatga 226  Q
    |||||||||||  || |||||||  |||||||||  ||  |||| || ||||||  ||||| || |||||||   |||||||||||||||||||||||||    
T  25894765 tcaaaatctttagaattaaaactttatctcttttatttctaatgctatagttccttgagaccgacagggtatgggaatggaacatgtttgtttgatatga 25894666  T
Q  227 gttagtccctatgc 240  Q
     |||||||||||||    
T  25894665 cttagtccctatgc 25894652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 14918321 - 14918366
Alignment:
Q  5 actaaccacttttgtggttagggaatgattagataataattatgtt 50  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||    
T  14918321 actaaccacttttatggttatggaatgattagttaataattatgtt 14918366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 18609969 - 18609935
Alignment:
Q  12 acttttgtggttagggaatgattagataataatta 46  Q
    ||||||||||||| |||||||||||||||||||||    
T  18609969 acttttgtggttaaggaatgattagataataatta 18609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 27467162 - 27467084
Alignment:
Q  101 gcttctttcaaacaaaccgttttaagtcaaaatctttgaaagtaaaactcgatctcttttgctttcaatgttaaagttc 179  Q
    |||||||||||| || | ||||||| | |||||| |||||||| ||||| |||||||||| ||||  |||||| |||||    
T  27467162 gcttctttcaaaaaatctgttttaactaaaaatccttgaaagtgaaacttgatctcttttacttttgatgttatagttc 27467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 42296142 - 42296101
Alignment:
Q  8 aaccacttttgtggttagggaatgattagataataattatgt 49  Q
    ||||||||||||||||| ||||||||||  ||||||||||||    
T  42296142 aaccacttttgtggttaaggaatgattaagtaataattatgt 42296101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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