View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14718_high_15 (Length: 228)

Name: NF14718_high_15
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14718_high_15
NF14718_high_15
[»] chr4 (8 HSPs)
chr4 (18-214)||(4732412-4732608)
chr4 (152-209)||(9354719-9354776)
chr4 (152-212)||(6337788-6337848)
chr4 (149-211)||(9409432-9409494)
chr4 (155-204)||(24924657-24924706)
chr4 (43-87)||(16403932-16403976)
chr4 (152-184)||(16674917-16674949)
chr4 (152-212)||(41457336-41457396)
[»] scaffold1102 (1 HSPs)
scaffold1102 (152-212)||(1173-1233)
[»] chr6 (11 HSPs)
chr6 (152-212)||(16142346-16142406)
chr6 (149-212)||(14767088-14767151)
chr6 (156-212)||(18713511-18713567)
chr6 (152-204)||(10163506-10163558)
chr6 (152-203)||(242288-242338)
chr6 (152-203)||(4031290-4031341)
chr6 (152-206)||(16793078-16793132)
chr6 (149-211)||(17524671-17524733)
chr6 (152-202)||(28712178-28712228)
chr6 (149-210)||(17948160-17948221)
chr6 (152-204)||(17296459-17296511)
[»] chr1 (8 HSPs)
chr1 (149-208)||(22608130-22608189)
chr1 (152-209)||(25018442-25018499)
chr1 (152-212)||(17615060-17615120)
chr1 (149-208)||(33102838-33102897)
chr1 (149-212)||(36571963-36572026)
chr1 (152-204)||(16083456-16083508)
chr1 (165-209)||(20866051-20866095)
chr1 (152-204)||(22785332-22785384)
[»] chr5 (12 HSPs)
chr5 (152-204)||(10235848-10235900)
chr5 (152-212)||(31533277-31533337)
chr5 (154-206)||(23355457-23355509)
chr5 (149-210)||(17167561-17167622)
chr5 (152-211)||(21390463-21390522)
chr5 (152-203)||(22847826-22847877)
chr5 (152-206)||(24663360-24663414)
chr5 (152-206)||(24878163-24878217)
chr5 (152-197)||(28619498-28619543)
chr5 (148-180)||(20064728-20064760)
chr5 (152-184)||(21166433-21166465)
chr5 (152-212)||(25667529-25667589)
[»] chr3 (11 HSPs)
chr3 (152-212)||(8737455-8737515)
chr3 (152-212)||(9089693-9089753)
chr3 (148-206)||(4765957-4766015)
chr3 (152-209)||(14132343-14132400)
chr3 (152-204)||(15987373-15987425)
chr3 (149-204)||(4832795-4832850)
chr3 (152-203)||(27718238-27718289)
chr3 (152-184)||(5495372-5495404)
chr3 (157-209)||(12144791-12144843)
chr3 (152-204)||(25320990-25321042)
chr3 (152-204)||(53589370-53589422)
[»] chr8 (9 HSPs)
chr8 (155-212)||(27123898-27123955)
chr8 (150-212)||(9217957-9218019)
chr8 (147-212)||(24681039-24681104)
chr8 (150-210)||(12669073-12669133)
chr8 (152-212)||(13109994-13110054)
chr8 (152-212)||(18672411-18672471)
chr8 (152-212)||(25094859-25094919)
chr8 (154-212)||(22713908-22713966)
chr8 (154-203)||(10600443-10600492)
[»] scaffold0039 (2 HSPs)
scaffold0039 (152-212)||(51871-51931)
scaffold0039 (152-213)||(33495-33556)
[»] chr2 (11 HSPs)
chr2 (152-204)||(23388929-23388981)
chr2 (154-206)||(29891564-29891616)
chr2 (150-205)||(25520677-25520732)
chr2 (152-206)||(17162254-17162308)
chr2 (149-210)||(18929122-18929183)
chr2 (149-210)||(24543671-24543732)
chr2 (152-202)||(17636519-17636569)
chr2 (152-202)||(17676377-17676427)
chr2 (154-204)||(20515802-20515852)
chr2 (152-197)||(13370182-13370227)
chr2 (152-212)||(32890199-32890259)
[»] chr7 (4 HSPs)
chr7 (152-210)||(18046259-18046317)
chr7 (152-213)||(41131715-41131776)
chr7 (152-212)||(18084087-18084147)
chr7 (152-204)||(12468721-12468773)
[»] scaffold0002 (1 HSPs)
scaffold0002 (149-210)||(376447-376508)
[»] scaffold0142 (1 HSPs)
scaffold0142 (152-212)||(20341-20401)
[»] scaffold0337 (1 HSPs)
scaffold0337 (149-212)||(4348-4411)
[»] scaffold0065 (1 HSPs)
scaffold0065 (149-212)||(15092-15155)
[»] scaffold0024 (1 HSPs)
scaffold0024 (151-204)||(39167-39220)
[»] scaffold0014 (1 HSPs)
scaffold0014 (154-212)||(191979-192037)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4732608 - 4732412
Alignment:
Q  18 agatttcacataagtgtgtggaaattgagttgaagtgtggtattttagattggtggacttgcaccatgggttcagaatgaataatatgaagatttttcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732608 agatttcacataagtgtgtggaaattgagttgaagtgtggtattttagattggtggacttgcaccatgggttcagaatgaataatatgaagatttttcaa 4732509  T
Q  118 acacattttgataaacgtcttttaaatcgaaaaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctttg 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4732508 acacactttgataaacgtcttctaaatcgaaaaatgcacaacatgtcctaggatttctggtttgatcctgtttgtaataaccaaaaccagccctttg 4732412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 9354719 - 9354776
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcc 209  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  9354719 tgcacaacatgtcctataatttctggtttgatcatgaatgtaataaccaaaaccagcc 9354776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 6337848 - 6337788
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||  ||||||||||||||  ||| |||||||||||||| ||||||||    
T  6337848 tgcacaacatgtcctaagatttctggtttgattctgtctgtaataaccaaaatcagccctt 6337788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 9409432 - 9409494
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccct 211  Q
    ||||||||||||||||||| | ||| | |||||||| |  |||||||||| ||||||||||||    
T  9409432 aaatgcacaacatgtcctaaatttttttgtttgatccttcttgtaataacaaaaaccagccct 9409494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 24924706 - 24924657
Alignment:
Q  155 acaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||| ||||||||| |||||||||||||||||| || |||||| ||||||    
T  24924706 acaatatgtcctagtatttctggtttgatcatgcttataataatcaaaac 24924657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 16403976 - 16403932
Alignment:
Q  43 tgagttgaagtgtggtattttagattggtggacttgcaccatggg 87  Q
    |||||| ||||||||| | |||||||||||| |||||||||||||    
T  16403976 tgagttaaagtgtggtctcttagattggtggtcttgcaccatggg 16403932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 16674949 - 16674917
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatc 184  Q
    |||||||||||||||||||||||| ||||||||    
T  16674949 tgcacaacatgtcctagaatttcttgtttgatc 16674917  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 41457396 - 41457336
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||| ||||  ||||||||||||||||| |  || ||||||||||||||| |||||    
T  41457396 tgcacaacaagtccaggaatttctggtttgatcctacttttaataaccaaaaccatccctt 41457336  T

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Target: scaffold1102 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 1173 - 1233
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  1173 tgcacaacatgtcctagaatttctggtttgatcttgcttgtaataaccaaaaccagccctt 1233  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 16142406 - 16142346
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  16142406 tgcacaacatgtcctaggatttctagtttgatcatgtttgtaataaccaaaaccagccctt 16142346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 14767088 - 14767151
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||    
T  14767088 aaatgcacaacatgtcctagaatttctggtttgatcgtgcttgtaataatcaaaactagccctt 14767151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 18713567 - 18713511
Alignment:
Q  156 caacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||| || ||||||||||||||| || ||||||||| ||||||||||||||    
T  18713567 caacatgtccaaggatttctggtttgatcttgcttgtaataatcaaaaccagccctt 18713511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 10163506 - 10163558
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||| || ||||||||||||||||||| || ||||||||| ||||||    
T  10163506 tgcacaacatatcttagaatttctggtttgatcctgcttgtaataatcaaaac 10163558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 242288 - 242338
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaa 203  Q
    ||||||||||||||||| ||| ||||||||||| || |||||||||||||||    
T  242288 tgcacaacatgtcctaggatt-ctggtttgatcttgcttgtaataaccaaaa 242338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 4031290 - 4031341
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaa 203  Q
    |||||||||||| |||| |||||||||||||||||| ||||| ||| |||||    
T  4031290 tgcacaacatgttctaggatttctggtttgatcatgcttgtagtaatcaaaa 4031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 16793132 - 16793078
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    |||||||| ||||||||| ||||| |||||||  || ||||||||||||||||||    
T  16793132 tgcacaacgtgtcctagactttcttgtttgattctgcttgtaataaccaaaacca 16793078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 17524733 - 17524671
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccct 211  Q
    |||| ||||||||||| ||| |||||  ||| |||| || |||||||||||||||||||||||    
T  17524733 aaattcacaacatgtcttaggatttcaagttagatcctgcttgtaataaccaaaaccagccct 17524671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 28712228 - 28712178
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaa 202  Q
    ||||||||||||||||| ||||||||||||||| ||  |||||||| ||||    
T  28712228 tgcacaacatgtcctaggatttctggtttgatcttgcctgtaataatcaaa 28712178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 17948160 - 17948221
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||||||||||||||||||| |||||| ||| |||  |  ||||||||| ||||||||||||    
T  17948160 aaatgcacaacatgtcctaggatttcttgttggatacttcttgtaataatcaaaaccagccc 17948221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 17296459 - 17296511
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    ||||||||||||  ||| |||||| |||||||| || ||||||||||||||||    
T  17296459 tgcacaacatgttgtaggatttcttgtttgatcctgattgtaataaccaaaac 17296511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 22608130 - 22608189
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagc 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  22608130 aaatgcacaacatgtcctaggatttctggtttgatcatgtttgtaataatcgaaaccagc 22608189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 25018499 - 25018442
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcc 209  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  25018499 tgcacaacatgtcctaggatttctggtttgatcatgcttgtaataatcaaaactagcc 25018442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 17615120 - 17615060
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||  |||||||||||||    
T  17615120 tgcacaacatgtcctaggatttctggtttgatcctgcttgtaataattaaaaccagccctt 17615060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 33102897 - 33102838
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagc 208  Q
    |||||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||    
T  33102897 aaatgcacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaaccagc 33102838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 36571963 - 36572026
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||||||||||| |||||||||  || ||| ||||| ||||| ||||||||    
T  36571963 aaatgcacaacatgtcctagaatttatggtttgattctgcttgcaataatcaaaatcagccctt 36572026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 16083508 - 16083456
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||| ||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  16083508 tgcataacatgtcctagggtttctggtttgatcctgtttgtaataatcaaaac 16083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 20866095 - 20866051
Alignment:
Q  165 ctagaatttctggtttgatcatgtttgtaataaccaaaaccagcc 209  Q
    |||||||||||||||||||  || ||||||||| |||||||||||    
T  20866095 ctagaatttctggtttgatactgattgtaataatcaaaaccagcc 20866051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 22785332 - 22785384
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||||| |||||||||||| ||||||| |  ||||||||| ||||||    
T  22785332 tgcacaacatgttctagaatttctgatttgatcttacttgtaataatcaaaac 22785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10235900 - 10235848
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10235900 tgcacaacatgtcctagaatttctggtttgatcatgcttgtaataatcaaaac 10235848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 31533277 - 31533337
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||| ||||| |||| |||| || ||||||||||||||||||||||||    
T  31533277 tgcacaacatgtcctaggatttcgggttcgatcctgcttgtaataaccaaaaccagccctt 31533337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 23355509 - 23355457
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    ||||||||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  23355509 cacaacatgtcctaggatttctagtttgatcattcttgtaataaccaaaacca 23355457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 17167561 - 17167622
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||||||||||||||||||| |||| |||||| ||| || ||||||||| ||||| ||||||    
T  17167561 aaatgcacaacatgtcctaggatttatggttttatcctgcttgtaataatcaaaatcagccc 17167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 21390522 - 21390463
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccct 211  Q
    ||||||||||| ||||| |||||||||| ||||||  |||| |||| |||||||||||||    
T  21390522 tgcacaacatgccctaggatttctggttagatcattcttgtcataaacaaaaccagccct 21390463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 22847877 - 22847826
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaa 203  Q
    ||||||| ||||||||| |||||| ||||||||||| |||||||||| ||||    
T  22847877 tgcacaaaatgtcctaggatttctagtttgatcatgcttgtaataacaaaaa 22847826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 24663414 - 24663360
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    |||||| |||||||||  |||||| |||||||| || ||||||||||||||||||    
T  24663414 tgcacatcatgtcctaagatttcttgtttgatcgtgcttgtaataaccaaaacca 24663360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 24878217 - 24878163
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    ||||||||||||||||| ||||||| ||||||| || |||||||||  |||||||    
T  24878217 tgcacaacatgtcctaggatttctgctttgatcctgcttgtaataattaaaacca 24878163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 28619498 - 28619543
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataa 197  Q
    ||||||||||||||||  ||||||||||||||| || |||||||||    
T  28619498 tgcacaacatgtcctatgatttctggtttgatcctgcttgtaataa 28619543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 20064728 - 20064760
Alignment:
Q  148 aaaatgcacaacatgtcctagaatttctggttt 180  Q
    |||||||||||||||||||||||| ||||||||    
T  20064728 aaaatgcacaacatgtcctagaatatctggttt 20064760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 21166433 - 21166465
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatc 184  Q
    |||||||||||||||||||||||| ||||||||    
T  21166433 tgcacaacatgtcctagaatttctagtttgatc 21166465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 25667529 - 25667589
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||  |||||  |||| | |||||||| || ||||||||||||||||||||||||    
T  25667529 tgcacaacagctcctaagatttttagtttgatcctgcttgtaataaccaaaaccagccctt 25667589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 8737455 - 8737515
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||    
T  8737455 tgcacaacatgtcctagaatttctagtttgatcatgcttgtaataataaaaaccagccctt 8737515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 9089693 - 9089753
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||    
T  9089693 tgcacaacatgtcctagaatttctagtttgatcatgcttgtaataataaaaaccagccctt 9089753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 4765957 - 4766015
Alignment:
Q  148 aaaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    ||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||    
T  4765957 aaaatgcacaacatgtcctaggatttctggtttgttcctgcttgtaataaccaaaacca 4766015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 14132343 - 14132400
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcc 209  Q
    ||||||||||||||| | |||||| |||||||| || |||||||||||||||||||||    
T  14132343 tgcacaacatgtccttggatttctagtttgatcctgcttgtaataaccaaaaccagcc 14132400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 15987425 - 15987373
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||||||||||    
T  15987425 tgcacaacatgtcctagaatttctagtttgatcctacttgtaataaccaaaac 15987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 4832795 - 4832850
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||||||||||| | |||| |||||||||| |  ||||||||||||||||    
T  4832795 aaatgcacaacatgtcctgggatttttggtttgatcctacttgtaataaccaaaac 4832850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 27718238 - 27718289
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaa 203  Q
    |||||||||||||  |||||||||| |||||||||| ||||||||| |||||    
T  27718238 tgcacaacatgtctaagaatttctgatttgatcatgcttgtaataatcaaaa 27718289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 5495404 - 5495372
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatc 184  Q
    ||||||||||||||||| |||||||||||||||    
T  5495404 tgcacaacatgtcctaggatttctggtttgatc 5495372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 12144843 - 12144791
Alignment:
Q  157 aacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcc 209  Q
    |||||||| ||| ||||||||||| ||| |  |||||||||||||||||||||    
T  12144843 aacatgtcgtaggatttctggtttaatcctacttgtaataaccaaaaccagcc 12144791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 25321042 - 25320990
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    ||||||||||||||||  |||| |||||||| |||| ||||||||| ||||||    
T  25321042 tgcacaacatgtcctacgatttttggtttgaccatgcttgtaataatcaaaac 25320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 53589370 - 53589422
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    ||||||| ||||||||| ||||||||||||||| |  ||||||||| ||||||    
T  53589370 tgcacaaaatgtcctaggatttctggtttgatcctacttgtaataatcaaaac 53589422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 27123898 - 27123955
Alignment:
Q  155 acaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||    
T  27123898 acaacatgtcctaggatttctgatttgatcatgcttgtaataaccaaaaccatccctt 27123955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 9218019 - 9217957
Alignment:
Q  150 aatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||| ||||| ||| |||||||||||||||||| | || |||||||||||||||||||    
T  9218019 aatgcacaatatgtcataggatttctggtttgatcatgctggttataaccaaaaccagccctt 9217957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 24681039 - 24681104
Alignment:
Q  147 aaaaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||| ||||||||||| ||| ||||||||||||||  || ||||||||| ||||||||||||||    
T  24681039 aaaaattcacaacatgtcataggatttctggtttgattctgcttgtaataatcaaaaccagccctt 24681104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12669073 - 12669133
Alignment:
Q  150 aatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||||||||||||| |||  ||||||||||||||| || ||||||||| ||||||||||||    
T  12669073 aatgcacaacatgttctatgatttctggtttgatcctgcttgtaataatcaaaaccagccc 12669133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 13110054 - 13109994
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||| ||||||||||||||  |  ||||||||||||||| ||||||||    
T  13110054 tgcacaacatgtcctaggatttctggtttgatgctacttgtaataaccaaaatcagccctt 13109994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 18672411 - 18672471
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||||||||||| ||||||  || |||||||||| ||||||| |||||    
T  18672411 tgcacaacatgtcctagaatttctgctttgatgctgcttgtaataactaaaaccaaccctt 18672471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 25094919 - 25094859
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||| | |||||| |||||    
T  25094919 tgcacaacatgccctagaatttctggtttgatcctgcttgtaataatctaaaccaaccctt 25094859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 22713908 - 22713966
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||| ||||  |||||||||||||| || |||||||||  |||||||||||||    
T  22713908 cacaacatgttctagggtttctggtttgatcctgcttgtaataataaaaaccagccctt 22713966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 10600443 - 10600492
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaa 203  Q
    ||||||||||||||  ||||||| | |||||||| |||||||||||||||    
T  10600443 cacaacatgtcctacgatttctgctatgatcatgcttgtaataaccaaaa 10600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 51871 - 51931
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||| ||||||| |||||    
T  51871 tgcacaacatgtcctagaatttctgatttgatcctgcttgtaataactaaaaccatccctt 51931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 33495 - 33556
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcccttt 213  Q
    ||||||||||||| ||| ||||||||||||||| || |||||||||| ||||||| ||||||    
T  33495 tgcacaacatgtcataggatttctggtttgatcctgcttgtaataacaaaaaccaacccttt 33556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23388981 - 23388929
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  23388981 tgcacaacatgtcctaggatttctggtttgatcatgcttgtaataatcaaaac 23388929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 29891564 - 29891616
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    ||||||||||||||| |||| |||||||||| || ||||||||||||||||||    
T  29891564 cacaacatgtcctaggatttatggtttgatcctgcttgtaataaccaaaacca 29891616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 25520677 - 25520732
Alignment:
Q  150 aatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacc 205  Q
    ||||||||||||||||||| ||||  ||||||||| || |||||||||||||||||    
T  25520677 aatgcacaacatgtcctaggattttgggtttgatcctgcttgtaataaccaaaacc 25520732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 17162254 - 17162308
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaacca 206  Q
    ||||||||||||| ||| ||||||||||||||| || ||||||||| ||||||||    
T  17162254 tgcacaacatgtcataggatttctggtttgatcctgcttgtaataatcaaaacca 17162308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 18929183 - 18929122
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||||||||||||||||||| || ||||||||| || || | ||||||| ||||||||||||    
T  18929183 aaatgcacaacatgtcctaggatctctggtttggtcctgctcgtaataatcaaaaccagccc 18929122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 24543732 - 24543671
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||||||||| || ||||| ||||||| ||||||||||| ||||||||| ||||| ||||||    
T  24543732 aaatgcacaatatatcctaaaatttctagtttgatcatgcttgtaataatcaaaatcagccc 24543671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 17636569 - 17636519
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaa 202  Q
    ||||||| || |||||| ||||||||||||||| || ||||||||||||||    
T  17636569 tgcacaatatatcctaggatttctggtttgatcctgcttgtaataaccaaa 17636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 17676427 - 17676377
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaa 202  Q
    ||||||| || |||||| ||||||||||||||| || ||||||||||||||    
T  17676427 tgcacaatatatcctaggatttctggtttgatcctgcttgtaataaccaaa 17676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 20515802 - 20515852
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    ||||||||||||||  ||||||||||||||| || ||||||||| ||||||    
T  20515802 cacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaac 20515852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 13370227 - 13370182
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataa 197  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||    
T  13370227 tgcacaacatgttctagaatttctgatttgatcctgcttgtaataa 13370182  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 32890259 - 32890199
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||| ||| |||| |||||||||  || ||||||||||||||| || |||||    
T  32890259 tgcacaacatgtcttaggatttatggtttgattctgcttgtaataaccaaaatcaaccctt 32890199  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 18046317 - 18046259
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||||||||| ||||||    
T  18046317 tgcacaacatgtcctagtatttctagtttgatcctgcttgtaataaccaaaatcagccc 18046259  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 41131776 - 41131715
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagcccttt 213  Q
    |||||||||| |||||||||||||  ||||||| || ||||||||| |||||||| ||||||    
T  41131776 tgcacaacatatcctagaatttctaatttgatcgtgcttgtaataatcaaaaccaacccttt 41131715  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 18084147 - 18084087
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||||  ||| |||||| |||||||| |  ||||||||||||||||||||||||    
T  18084147 tgcacaacatgtattaggatttctagtttgatccttcttgtaataaccaaaaccagccctt 18084087  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 12468773 - 12468721
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||| |||||||||||| |||||||| |||| |||| ||||||||| ||||||    
T  12468773 tgcataacatgtcctaggatttctggattgaccatgcttgtaataatcaaaac 12468721  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 376447 - 376508
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccc 210  Q
    |||| ||||||||||||||| ||||||||||||||| |  ||||||||| ||||||||||||    
T  376447 aaattcacaacatgtcctaggatttctggtttgatcctccttgtaataatcaaaaccagccc 376508  T

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Target: scaffold0142 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 20401 - 20341
Alignment:
Q  152 tgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||||||||||||| |  ||||||||||||||| || |||||||||||||||||| |||||    
T  20401 tgcacaacatgtcccaagatttctggtttgatcctgcttgtaataaccaaaaccatccctt 20341  T

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Target: scaffold0337 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 4411 - 4348
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||| ||||||| ||||||| ||||||||||||||| || ||||||||| |||||||| |||||    
T  4411 aaatccacaacacgtcctaggatttctggtttgatcctgcttgtaataatcaaaaccatccctt 4348  T

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Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 15155 - 15092
Alignment:
Q  149 aaatgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    |||| ||||||| ||||||| |||| ||||||||||||| ||||||||| |||||||| |||||    
T  15155 aaatccacaacacgtcctaggatttgtggtttgatcatgcttgtaataatcaaaaccatccctt 15092  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 39167 - 39220
Alignment:
Q  151 atgcacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaac 204  Q
    |||||||||||||||||  |||||| |||||||| || ||||||||||||||||    
T  39167 atgcacaacatgtcctaagatttctagtttgatcctgcttgtaataaccaaaac 39220  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 191979 - 192037
Alignment:
Q  154 cacaacatgtcctagaatttctggtttgatcatgtttgtaataaccaaaaccagccctt 212  Q
    ||||||||||| ||  |||||| ||||||||||| || ||||||||||||| |||||||    
T  191979 cacaacatgtcgtaagatttctagtttgatcatgcttataataaccaaaactagccctt 192037  T

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