View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14718_high_17 (Length: 202)
Name: NF14718_high_17
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 24072777 - 24072611
Alignment:
| Q |
22 |
actgtattccttcattatatactcaatacacgtgtcactcatgtatatgagtcagcaatagtaataggttctactagcttatacaatgtatttaacacac |
121 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||| |
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| T |
24072777 |
actgtattcattcattatatacgcaatacacgtgtcactcatgtatatgagtcagcaatagaaataggttcaactagcttatacactatatttaacacac |
24072678 |
T |
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| Q |
122 |
ctccttaagctagtttctaacataaagcaaataacagcataaaaacattcatctaaactagttcatt |
188 |
Q |
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| T |
24072677 |
ccccttaagctagtttctaacataaagcaaataacagcaaaagagcattcatctaaactagttcatt |
24072611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 24068273 - 24068173
Alignment:
| Q |
18 |
catcactgtattccttcattatatactcaatacacgtgtcactcatgtatatgagtcagcaatagtaataggttctactagcttatacaatgtatttaac |
117 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||| |
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| T |
24068273 |
catcactgtattcattcattatatactcaatgcacgtgtcactcatgtatatgagtcagcaatagaaataggttcaactagcttatacactatatttaac |
24068174 |
T |
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| Q |
118 |
a |
118 |
Q |
| |
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| |
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| T |
24068173 |
a |
24068173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 50463562 - 50463462
Alignment:
| Q |
18 |
catcactgtattccttcattatatactcaatacacgtgtcactcatgtatatgagtcagcaatagtaataggttctactagcttatacaatgtatttaac |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
50463562 |
catcactgtattcattcattatatactcaatacacgtgtcactcatgtatatgagtcagcaatagtaataggttcaactagcttgtacactgtatttaac |
50463463 |
T |
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| Q |
118 |
a |
118 |
Q |
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| |
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| T |
50463462 |
a |
50463462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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