View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14718_high_3 (Length: 423)
Name: NF14718_high_3
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 406
Target Start/End: Original strand, 37028136 - 37028543
Alignment:
| Q |
6 |
tagcataggctaaggatagacggttcatttgatgaattttttgtcaatattatatatatcacatacacgtggtggactggatggtatatatactaacata |
105 |
Q |
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| T |
37028136 |
tagcataggctaaggatagacggttcatttgatgaattttttgtcaatattatatatatcacatacacgtggtggactggatggtatatatactaacata |
37028235 |
T |
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| Q |
106 |
gatcatagatatattaaaatatcaaccatgatannnnnnnnnagtcattcttaggaatatcttatg-cttatt----tggatctcttcatggtttaatat |
200 |
Q |
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| T |
37028236 |
gatcatagatatattaaaatatcaaccatgatatttttttttagtcatccttaggaatatcttatgccttatttggatggatctcttcatgatttaatat |
37028335 |
T |
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| Q |
201 |
aattttggcatctttcttaaaaaataaataaattattttggcttct--tnnnnnnnncaataatannnnnnnncttcaactgttattttttattttacaa |
298 |
Q |
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| T |
37028336 |
aattttggcttctttcttaaaaaataaataaattattttggcttcttcttaaaaaaacaataatattttttttcttcaactgttattctttattttacaa |
37028435 |
T |
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| Q |
299 |
ctaagaagagttaaaatctaacggaagatgttagactgccacaacataacgaattaagattcaattgaaatatgtatgttgtcgagaccagatcgcaaag |
398 |
Q |
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| T |
37028436 |
ctaagaagagttaaaatctaacggaagatgttagactaccacaacatggcgaattaagattcaattaaaatatgtatgttgtcgagaccagaacgcaaag |
37028535 |
T |
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| Q |
399 |
tcgaatat |
406 |
Q |
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| T |
37028536 |
tcgaatat |
37028543 |
T |
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