View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14718_high_6 (Length: 344)
Name: NF14718_high_6
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 47893276 - 47892941
Alignment:
| Q |
1 |
ccctccattttgtcttcatttcaattcgatataagtttaatttaaatatctctctctcatcttaagtagtactgtatgcttttcctcaaacagataatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893276 |
ccctccattttgtcttcatttcaattcgatataagtttaatttaaatctatctctctcatcttaagtagtactgtatgcttttcctcaaacagataatta |
47893177 |
T |
|
| Q |
101 |
tctcatgtaattatttgttattttaaaatactnnnnnnntttaatcacannnnnnnnactaataccttgatatgatactatcttaatccatttaataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893176 |
tctcatgtaattatttgttattttaaaatactaaaaaaatttaatcacattttttttactaataccttgatatgatactatcttaatccatttaataatt |
47893077 |
T |
|
| Q |
201 |
ttattnnnnnnntgtagattagataatctaaattatactaaaatataagacggaaatagtacttttctagcaattaatgctaatttgtcgtctacggttc |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893076 |
ttattaaaaaaatgtagattagataatctaaattatactaaaatataagacggaaatagtacttttctagcaattaatgctaatttgtcgtctacggttc |
47892977 |
T |
|
| Q |
301 |
atctattatatagccatgcccccctcttagccatct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47892976 |
atctattatatagccatgcccccctcttagccatct |
47892941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University