View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14718_high_9 (Length: 282)

Name: NF14718_high_9
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14718_high_9
NF14718_high_9
[»] chr3 (2 HSPs)
chr3 (9-266)||(25915394-25915651)
chr3 (9-266)||(25901376-25901633)
[»] chr4 (13 HSPs)
chr4 (24-265)||(10571388-10571629)
chr4 (21-265)||(10553655-10553899)
chr4 (16-141)||(10460466-10460591)
chr4 (62-127)||(10482036-10482101)
chr4 (70-142)||(6392661-6392732)
chr4 (61-137)||(10493520-10493596)
chr4 (62-127)||(10467898-10467963)
chr4 (61-132)||(829721-829792)
chr4 (16-139)||(8447758-8447881)
chr4 (60-142)||(10464106-10464188)
chr4 (96-141)||(1110987-1111032)
chr4 (60-140)||(6388082-6388162)
chr4 (177-261)||(10460343-10460427)
[»] chr1 (2 HSPs)
chr1 (62-117)||(50645635-50645690)
chr1 (49-142)||(4366632-4366725)
[»] chr7 (1 HSPs)
chr7 (50-137)||(26256620-26256707)
[»] chr6 (1 HSPs)
chr6 (72-137)||(19746854-19746919)
[»] chr2 (1 HSPs)
chr2 (178-226)||(25376860-25376908)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 25915394 - 25915651
Alignment:
Q  9 caaagggagtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915394 caaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 25915493  T
Q  109 caagtgaaacgatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 208  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915494 caagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 25915593  T
Q  209 gccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcaca 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915594 accactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcaca 25915651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 25901376 - 25901633
Alignment:
Q  9 caaagggagtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25901376 caaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagat 25901475  T
Q  109 caagtgaaacgatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 208  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  25901476 caagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcataatctgaatagaagtaattgtgaagtgccaaccagttaatagt 25901575  T
Q  209 gccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcaca 266  Q
     ||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||    
T  25901576 accactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcaca 25901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 10571388 - 10571629
Alignment:
Q  24 aaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatca 123  Q
    ||||||||||  ||||| |||||||  | ||| ||||||||||||||||| |||||||| | ||||||||||||||| || |||||||||||||| ||||    
T  10571388 aaaaccacaagcgttggttgaacacaagacacctcgtcaaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatca 10571487  T
Q  124 catattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaac 223  Q
    |||||||||||||||||||  ||||||||||| ||| |||||| |||||||||||||||| |||||| | || ||||||||| || |||||||| || ||    
T  10571488 catattgctcaacagtaatactactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtcatccagttaattgtaccactcaaatacac 10571587  T
Q  224 accttggctcttatcacgatgaaaccaataaaggggaagcac 265  Q
    ||| | | |||| ||||| | |||||| ||||| ||||||||    
T  10571588 accattgttcttttcacgcttaaaccagtaaagtggaagcac 10571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 10553655 - 10553899
Alignment:
Q  21 atcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacga 120  Q
    |||||| ||||||  ||||| |||||||| | ||| | |||||||||||| || |||||||| | ||||||||||||||| || |||||||||||||| |    
T  10553655 atcaaacccacaagcgttggctgaacacgagacaccttgtcaaaaccccggggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaa 10553754  T
Q  121 tcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagta 220  Q
    || |||||||| ||||| |||| || ||||||||| ||| |||||| |||||||||||||||| |||||| | |||||||||||| || ||| |||| ||    
T  10553755 tcccatattgcgcaacactaatattgctaacattaccaatttcataatcagaatagaagtaatcgcgaagggtcaaccagttaattgtaccattcaaata 10553854  T
Q  221 aacaccttggctcttatcacgatgaaaccaataaaggggaagcac 265  Q
     ||||| | | |||| ||||| | |||||| ||||| ||||||||    
T  10553855 cacaccattgttcttttcacgcttaaaccagtaaagtggaagcac 10553899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 10460591 - 10460466
Alignment:
Q  16 agtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtga 115  Q
    |||||||||||||||||| |||||| |||  ||||||||| || || ||||||||||||| ||||| ||||||||||| ||||| ||| ||||| | |||    
T  10460591 agtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagagatccaatga 10460492  T
Q  116 aacgatcacatattgctcaacagtaa 141  Q
    ||| |||||||||| |||||||||||    
T  10460491 aacaatcacatatttctcaacagtaa 10460466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 10482101 - 10482036
Alignment:
Q  62 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacata 127  Q
    |||||||||||| |||||||| |||||||||| |||||| || |||||||||||||  ||||||||    
T  10482101 aaaaccccgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcacata 10482036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 6392732 - 6392661
Alignment:
Q  70 gaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 142  Q
    ||||||||||||| | |||||||| ||||||||| ||| | |||||||  |||||||||||||||||||||||    
T  6392732 gaggcagcaacaatttagtgtatgtctcagtggagaga-cgagtgaaagaatcacatattgctcaacagtaat 6392661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 10493596 - 10493520
Alignment:
Q  61 caaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 137  Q
    |||||||| |||||| |||||  |||||||||| ||||||||| ||||| | |||||  ||||||||||||||||||    
T  10493596 caaaaccctgaggcaacaacagttgagtgtatgtctcagtggaaagatcgactgaaagaatcacatattgctcaaca 10493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 10467963 - 10467898
Alignment:
Q  62 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacata 127  Q
    |||||| ||||| |||||||| |||||||||| |||||| || |||||||||||||  ||||||||    
T  10467963 aaaacctcgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcacata 10467898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 829721 - 829792
Alignment:
Q  61 caaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgct 132  Q
    ||||| || |||||||| |||| | |||||||| ||||||||| |||||||||||||  ||| |||||||||    
T  829721 caaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgcatattgct 829792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 8447758 - 8447881
Alignment:
Q  16 agtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtga 115  Q
    |||||||||||||  ||| ||| ||||||   | |||||| || ||||||||| |||||| ||||| |||||||| |||||| ||||| | | |||| ||    
T  8447758 agtccatcaaaactgcaagtgtcggatgatgtcatggcacctcatcaaaaccctgaggcaacaacagctgagtgtgtgactcggtggagatagcaagcga 8447857  T
Q  116 aacgatcacatattgctcaacagt 139  Q
    ||| |||| |||||  ||||||||    
T  8447858 aacaatcatatattcatcaacagt 8447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 10464188 - 10464106
Alignment:
Q  60 tcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 142  Q
    ||||||||||||||||||||||  |||||||| | ||||||||| ||||  | |||||  |||||||||| ||| | ||||||    
T  10464188 tcaaaaccccgaggcagcaacagttgagtgtacgtctcagtggaaagattgattgaaagaatcacatatttctccatagtaat 10464106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 1110987 - 1111032
Alignment:
Q  96 tcagtggacagatcaagtgaaacgatcacatattgctcaacagtaa 141  Q
    |||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  1110987 tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa 1111032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 6388162 - 6388082
Alignment:
Q  60 tcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagta 140  Q
    |||||| ||||||| ||||| || |||||||||  |||| | || |||||||||||||  |||||| |||||| |||||||    
T  6388162 tcaaaatcccgaggaagcaaaaattgagtgtatttctcacttgatagatcaagtgaaagaatcacacattgcttaacagta 6388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 10460427 - 10460343
Alignment:
Q  177 aagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaa 261  Q
    ||||||| | |||| ||||||||| ||||||| ||| |||| || ||||| | | |||||||||||| || ||||||||| ||||    
T  10460427 aagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgttcttatcacgataaatccaataaagtggaa 10460343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 50645635 - 50645690
Alignment:
Q  62 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaa 117  Q
    ||||||||||||||||||||  |||||||||| ||| ||||| |||||||||||||    
T  50645635 aaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaagtgaaa 50645690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 4366632 - 4366725
Alignment:
Q  49 gtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 142  Q
    |||||||||| |||||||| |||||||||||  | ||| |||||| ||| ||   ||||||||| ||||| || ||| |||||||||| |||||    
T  4366632 gtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaat 4366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 26256707 - 26256620
Alignment:
Q  50 tggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 137  Q
    |||||| || ||||||||  ||||||||||||||||  |||||| ||| || || |||||||| ||||  |||||| |||||||||||    
T  26256707 tggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 19746854 - 19746919
Alignment:
Q  72 ggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 137  Q
    |||||||| || || ||||||| |||||| || |||||||| ||||| |||||| |||||||||||    
T  19746854 ggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 25376908 - 25376860
Alignment:
Q  178 agtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacacc 226  Q
    ||||||||||||| ||||||||| ||||||| |||||||| || |||||    
T  25376908 agtaattgcgaagggccaaccaggtaatagtaccactcaaatacacacc 25376860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University