View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14718_low_11 (Length: 275)
Name: NF14718_low_11
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 47893258 - 47893378
Alignment:
| Q |
13 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893258 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
47893357 |
T |
|
| Q |
113 |
gtttggcatttgcatttttag |
133 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47893358 |
gtttggcatttgcatttttag |
47893378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 47893422 - 47893547
Alignment:
| Q |
132 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatgcatag---cat--tgatatt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| |
|
|
| T |
47893422 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatacataggcacatgatattatt |
47893521 |
T |
|
| Q |
227 |
catttctttctatatatagctagcta |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47893522 |
catttctttctatatatagctagcta |
47893547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University