View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14718_low_18 (Length: 219)
Name: NF14718_low_18
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 42672850 - 42673023
Alignment:
| Q |
32 |
aactatgaaaaattatacttaattaagttcataactagtaattataatctcattctcattaagtaggttgattcacttggttaatccatcataatctgnn |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42672850 |
aactatgaaaaattatacttaattaagttcataactagtaattataatctcattctcattaagtaggttgattcacttggttaatccatcataacctgaa |
42672949 |
T |
|
| Q |
132 |
nnnnntatggagggtgatt--tataacttatgagtctttgattgttaaatgtttttgtgcaggtcatgattctt |
203 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672950 |
aaaaatatggagggtgatttatataaccaatgagtctttgattgttaaatgtttttgtgcaggtcatgattctt |
42673023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University