View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14718_low_4 (Length: 395)
Name: NF14718_low_4
Description: NF14718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14718_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 6 - 386
Target Start/End: Complemental strand, 18029885 - 18029503
Alignment:
| Q |
6 |
acttacttgataacattaggggtatttgatatgtaagaatttgaatttgaatccacaatactccatttattcatgctttatgagtgtgatttttgtcatt |
105 |
Q |
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| T |
18029885 |
acttacttgataactttaggggtatttgatatgtaagaatttgaatttgaatccacaatactccatttattcatgctttatgtgtgtgatttttgtcatt |
18029786 |
T |
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| Q |
106 |
agactatttgattttaagaaacacatgatagtaacgggctaccttgtaa-------tatagtagtttaagttgatatttgttgttataggaaatgaaaat |
198 |
Q |
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| T |
18029785 |
agactatttgattttaagaaacacatgatagtaacgggctaccttgtaaattgtaatatagtagtttaagttgatatttgttgttataggaaatgaaaat |
18029686 |
T |
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| Q |
199 |
taaagtttcaattttggtagatggatgcagatcttataatttatagtagtgtttatgtacattataataaatgcaacatagagtggtgagatgtatataa |
298 |
Q |
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| T |
18029685 |
taaagtttcaattttggtagatggatgcagattttataatttatagtagtgtttatgtacattataataaatgcaacatagagtggtgagatgtatataa |
18029586 |
T |
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| Q |
299 |
ttgaagattgaacatggttcaaaacctcttttgtaatacataaaataaaatacaacattgtttttgggctttttccctcttttgtacc |
386 |
Q |
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| T |
18029585 |
ttgaagattgaacatatttcatcacctcttttgtattacataa-----aatacaacattgtttttgggctttttccctcttttgtacc |
18029503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 39352990 - 39352943
Alignment:
| Q |
291 |
gtatataattgaagattgaacatggttcaaaacctcttttgtaataca |
338 |
Q |
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| T |
39352990 |
gtatgtaattgaagattaaacatggttcaaaactgcttttgtaataca |
39352943 |
T |
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