View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_high_1 (Length: 497)
Name: NF14719_high_1
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 113 - 439
Target Start/End: Complemental strand, 35455045 - 35454713
Alignment:
| Q |
113 |
aattaacttgtccatatctgtatacatatgtaaattcgtgtgattacttgttaagatgttgcaattaatataaattaatttcaagacatccatttcgtat |
212 |
Q |
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| T |
35455045 |
aattaacttttccatatctgtatatatatgtaaattcgtgtgattacttgttaagatgttgcaataaatataaattaatttcaagacatccatttcgtat |
35454946 |
T |
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| Q |
213 |
ctagccctgctatttttccagtttggttgtcataaaaacggcaatatatttatt-aatttcattatcttgatgctccatcaccaccaaattccaatggat |
311 |
Q |
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| T |
35454945 |
ctagccctgctctttttccgatttggttgcaataaaaacgacaatagatatattaaatttcattatcttgatgctccatcaccaccaaattctaatagat |
35454846 |
T |
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| Q |
312 |
caagaatccatgcttgtaaatttctttatactttctcatattgaatgcaactctaatataacgtgacatgctcaaatgaca-agacatttcttaact--- |
407 |
Q |
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| T |
35454845 |
cacgaatccatgattgtaaatttctttatactttctcatattgaatgcaactctaatataacatgacgtgctcaaatgacagagacatttcttaacttgt |
35454746 |
T |
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| Q |
408 |
-tgtattattgccagaattcaaaatacatattt |
439 |
Q |
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| T |
35454745 |
atgtattattgccaaaattcaaaatacatattt |
35454713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 35455112 - 35455048
Alignment:
| Q |
17 |
cattcccatcattgtctttgacatagttttctcatccttgctaatttactctgtgatttctatgt |
81 |
Q |
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| T |
35455112 |
cattcccatcattgtctttgacatagttttctcatccttgctaatttactctgtgatttctatgt |
35455048 |
T |
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