View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14719_high_11 (Length: 250)
Name: NF14719_high_11
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_high_11 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 43505792 - 43505644
Alignment:
| Q |
92 |
tccatcagttatattttatgtttgggatgatcggttacattttttatttcttgatattctaatc--nnnnnnnnnngtcaagatattctaatc-ttttta |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
43505792 |
tccatcggttatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcttttttatttttgtcaagatattctaatcattttta |
43505693 |
T |
|
| Q |
189 |
tttgcatataaaaaactaagagtgctttataggccatttcagtttccct |
237 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
43505692 |
tttgcatataaaaaactaagagtgctatacaggccatttcattttccct |
43505644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 39071502 - 39071409
Alignment:
| Q |
62 |
attaatacatcatgggcctattnnnnnnnntccatcagttatattttatgtttgggatgatcggttacattttttatttcttgatattctaatc |
155 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39071502 |
attaatacatcatgggcctattaaaaaaaatccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatc |
39071409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43505914 - 43505851
Alignment:
| Q |
1 |
tgcttgttttacattccgtttttcattttcatttcccatataggttatgaattaactctccatt |
64 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43505914 |
tgcttgttttacattccatttttcattttcatttcccatataggttacgaattaactctccatt |
43505851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 39071420 - 39071353
Alignment:
| Q |
171 |
gatattctaatc-tttttatttgcatataaaaaactaagagtgctttataggccatttcagtttccct |
237 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
39071420 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaggccatttcattttccct |
39071353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39071591 - 39071531
Alignment:
| Q |
1 |
tgcttgttttacattccgttttt-cattttcatttcccatataggttatgaattaactctc |
60 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
39071591 |
tgcttcttttacattccattttttcattttcatttaccatataggttacgaattaactctc |
39071531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 348090 - 348155
Alignment:
| Q |
173 |
tattctaatc-tttttatttgcatataaaaaactaagagtgctttataggccatttcagtttccct |
237 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
348090 |
tattctaatcatttttatttgcatatataaaactaagagtgctatataggccatttcattttccct |
348155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 42124394 - 42124443
Alignment:
| Q |
18 |
gtttttcattttcatttcccatataggttatgaattaactctccattaat |
67 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||| |||||||||||||| |
|
|
| T |
42124394 |
gtttttcattttcattacccatataagttacgaaacaactctccattaat |
42124443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 49670 - 49715
Alignment:
| Q |
20 |
ttttcattttcatttcccatataggttatgaattaactctccattaat |
67 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
49670 |
ttttcattttcatttccc--ataagttacgaattaactctccattaat |
49715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University