View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_high_13 (Length: 245)
Name: NF14719_high_13
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 34834730 - 34834951
Alignment:
| Q |
8 |
aattgccaacatttttatttatctcctaagtaacaactacgtattacaaagattatgtgtaattataagcttgaacaagtacatttgtggtctaggcaaa |
107 |
Q |
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| T |
34834730 |
aattgccaacatttttatttatctcctgagtaacaactacgtattacatagattatgtgtaattataagcttgaacaagtacatttgtggtctaggcaaa |
34834829 |
T |
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| Q |
108 |
aattgtccattattcatcatcaattatttctaattaataggaacaaatgcacgaattctcttccctttatgatcatgacatctttttcttcctttaactg |
207 |
Q |
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| T |
34834830 |
aattgtccattattcatcatcaattatttctaattaataggaacaaatgcacgaattctcttccctttatgatcatgacatctttttcttcctttaactg |
34834929 |
T |
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| Q |
208 |
gttgtcttctacaagtggttcc |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
34834930 |
gttgtcttctacaagtggttcc |
34834951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 35336997 - 35336929
Alignment:
| Q |
155 |
tgcacgaattctcttccctttatgatcatgacatctttttcttcctttaactggttgtcttctacaagt |
223 |
Q |
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| T |
35336997 |
tgcacgaattctcctccctttatgttcctggcacctttttcttcctttaaccggttgtcttctacaagt |
35336929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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