View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_high_16 (Length: 206)
Name: NF14719_high_16
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 33814313 - 33814427
Alignment:
| Q |
54 |
aaccaaaattcaatatgcatcatctcttctactcttatgtgtaagaatcctatactttgggttatagatacaagggccagtgaccacatatcttacaaga |
153 |
Q |
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| T |
33814313 |
aaccaaaattcaatatgcatcatctcttctacttttatgtgtaagaatgctatactttgggttatagatacaagggccagtgaccacatatcttacaaga |
33814412 |
T |
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| Q |
154 |
ctaggacatatttct |
168 |
Q |
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| T |
33814413 |
ctaggacatatttct |
33814427 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 33814252 - 33814300
Alignment:
| Q |
13 |
caaaggagaaaattggaatgctactcttgtctacagattataaccaaaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33814252 |
caaaggagaaaattggaatgctactcttgtctacaaattataaccaaaa |
33814300 |
T |
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