View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_high_2 (Length: 409)
Name: NF14719_high_2
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 192 - 392
Target Start/End: Complemental strand, 26902248 - 26902048
Alignment:
| Q |
192 |
cattcggattcgggtcggatcctacatttctcgaaccgtcaccggaatcctccacaaccgagagaaatgacaggatccctcctccaaggattnnnnnnnn |
291 |
Q |
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| T |
26902248 |
cattcggattcgggtcggatcctacatttcttgaaccatcaccggaatcctccaccaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
26902149 |
T |
|
| Q |
292 |
gccggtccccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacatcgtcgccgccgaaccaccggt |
391 |
Q |
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| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26902148 |
gtcgatcaccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacaacgtcgccgccgaaccaccggt |
26902049 |
T |
|
| Q |
392 |
g |
392 |
Q |
| |
|
| |
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| T |
26902048 |
g |
26902048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 26902434 - 26902310
Alignment:
| Q |
6 |
tttaccgcggtaaatccatcgcagtgattctcccgcaatcacatctctccacatcatcactcccacacccattccctatataaactcccccattcttctc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26902434 |
tttaccgcggtaaatccatcgcagtgattctcccgcaatcacatctctccacatcatcactcccacacccattccctatataaactcccccattcttctc |
26902335 |
T |
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| Q |
106 |
tcatccctccaattccaaatcctga |
130 |
Q |
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||||||||||||||||||||||||| |
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| T |
26902334 |
tcatccctccaattccaaatcctga |
26902310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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