View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_low_10 (Length: 288)
Name: NF14719_low_10
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 35678454 - 35678300
Alignment:
| Q |
104 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
203 |
Q |
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| T |
35678454 |
tgaagactattcctttgattctaatgggttgtggaggagttggttctcaccttctccaacacattgtctcatcccgttctctccactcttcacaggtaat |
35678355 |
T |
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| Q |
204 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
258 |
Q |
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| T |
35678354 |
cgattctcatgtttctcattctgttttaatttccttgtatatcttcattcttctc |
35678300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35678534 - 35678477
Alignment:
| Q |
1 |
actgcttcttccattattccatttcataaaatccataaaattcaatttgcaactctaa |
58 |
Q |
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| T |
35678534 |
actgcttcttccattattccatttcataaaatccataaaattcaatttgcaactctaa |
35678477 |
T |
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