View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_low_11 (Length: 280)
Name: NF14719_low_11
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1857201 - 1857464
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtagg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1857201 |
tatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtggagttgctgacgggggagaaacctttttgttttggtagg |
1857300 |
T |
|
| Q |
101 |
ccggaggaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaaca |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1857301 |
ccggaagaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaaca |
1857400 |
T |
|
| Q |
201 |
aacaagaggtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
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|||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1857401 |
aacaagagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaag |
1857464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1868799 - 1869062
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtagg |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
1868799 |
tatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagagttgctgacgggggagaaacctttttgttttggtagg |
1868898 |
T |
|
| Q |
101 |
ccggaggaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaaca |
200 |
Q |
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| T |
1868899 |
ccggaagaaagaagaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaaca |
1868998 |
T |
|
| Q |
201 |
aacaagaggtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
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|||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1868999 |
aacaagagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaag |
1869062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1843190 - 1843453
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtagg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||| |
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| T |
1843190 |
tatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagagttgctaacgggggagaaacctttttgttttggtagg |
1843289 |
T |
|
| Q |
101 |
ccggaggaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaaca |
200 |
Q |
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||||| || |||||||||||||| ||| |||| |||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1843290 |
ccggaagagagaagaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaaca |
1843389 |
T |
|
| Q |
201 |
aacaagaggtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
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|||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1843390 |
aacaagagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaag |
1843453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 1815843 - 1815580
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
1815843 |
tatgcaaacaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaacgggggagaaacctttttgttttggtagg |
1815744 |
T |
|
| Q |
101 |
ccggaggaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaaca |
200 |
Q |
| |
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||||| || |||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1815743 |
ccggaagagagaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaaca |
1815644 |
T |
|
| Q |
201 |
aacaagaggtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
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|||||| | |||||||||| ||| ||||||||||||| ||||||||||||| |||||| ||||| |
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| T |
1815643 |
aacaagtgatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaag |
1815580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9218574 - 9218518
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttct |
57 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
9218574 |
tatgcaaacacatcaattaaccgaaaaaagtgatgtgtatagctttggagtagttct |
9218518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9161665 - 9161402
Alignment:
| Q |
1 |
tatgcaaacaagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtagg |
100 |
Q |
| |
|
|||||||||| ||| |||| || ||||||||||| ||||||||||| |||||||| | ||| | || ||||| || || ||| ||| |||| |||| |
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| T |
9161665 |
tatgcaaacacatcaactaacagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttcttacgggagacaaacctctttcttttaatagg |
9161566 |
T |
|
| Q |
101 |
ccggaggaaagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaaca |
200 |
Q |
| |
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|| || || | | |||||||||||||| ||| | ||||| || ||| | |||| | ||||||| |||||||| |||||| | ||||| ||||||| |
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| T |
9161565 |
ccagaagagaatatcagtcttgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaaca |
9161466 |
T |
|
| Q |
201 |
aacaagaggtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
|
| | ||| | | |||||| ||||||||||| || | |||||||||||| |||||||| ||||| |
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| T |
9161465 |
aggaggagattaaggaggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaag |
9161402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9170477 - 9170435
Alignment:
| Q |
15 |
aattaactgaaaaaagtgatgtctatagctttggagtagttct |
57 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
9170477 |
aattaaccgaaaaaagtgatgtttatagctttggagtagttct |
9170435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 9155740 - 9155700
Alignment:
| Q |
14 |
caattaactgaaaaaagtgatgtctatagctttggagtagt |
54 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
9155740 |
caattaaccgagaaaagtgatgtctatagctttggagtagt |
9155700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 9118800 - 9118843
Alignment:
| Q |
14 |
caattaactgaaaaaagtgatgtctatagctttggagtagttct |
57 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
9118800 |
caattaaccgagaaaagtgatgtttatagctttggagtagttct |
9118843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 9118902 - 9119050
Alignment:
| Q |
116 |
agtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatgg |
215 |
Q |
| |
|
|||||||||||||| || | ||||| || ||| | ||||| | ||||||| |||||||| ||| || | |||||| || ||||| ||||| | | || |
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| T |
9118902 |
agtcttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaagg |
9119001 |
T |
|
| Q |
216 |
aggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||||| |||| || ||||| |
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|
| T |
9119002 |
aggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaag |
9119050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 9199943 - 9199795
Alignment:
| Q |
116 |
agtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatgg |
215 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||| | |||||||| ||| || | | |||| |||||||| ||||| | | || |
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| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
|
| Q |
216 |
aggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaag |
264 |
Q |
| |
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|||| ||||||||||| || | |||||| ||||||||||| || ||||| |
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| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaag |
9199795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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