View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_low_13 (Length: 249)
Name: NF14719_low_13
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 46676054 - 46676245
Alignment:
| Q |
16 |
attagcagaaagagaacacgttaagcataaaactaaaggatattgacaagagtaccagaccctacgaacagagccaataaagcatggaacctacttgatg |
115 |
Q |
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| T |
46676054 |
attagcagaaagagaacacgttaagcataaaactaaaggatattgacaagagtaccagaccctatgaacagaaccaataaaacatggaacctacttgatg |
46676153 |
T |
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| Q |
116 |
gaagaaatttgataattaggagatgtaaaactaaggagtcatttttccaaaataaagatgagaagaataaagttatatgaagaattgataat |
207 |
Q |
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| T |
46676154 |
gaagaaatttgataattaggagatgtaaaactaaggagtcatttttccaaaataaaaatgagaagaataaagttatatgaagaattgataat |
46676245 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 21727579 - 21727636
Alignment:
| Q |
17 |
ttagcagaaagagaacacgttaagcataaaactaaaggatattgacaagagtaccagac |
75 |
Q |
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| T |
21727579 |
ttagcagaaagagaacacattaagcataaaact-aaggatattggaaagagtacaagac |
21727636 |
T |
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