View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_low_5 (Length: 357)
Name: NF14719_low_5
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 6451894 - 6451541
Alignment:
| Q |
1 |
cttatgtatggaataaagtcattgccacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcg |
100 |
Q |
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| T |
6451894 |
cttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcg |
6451795 |
T |
|
| Q |
101 |
atgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451794 |
atgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacaga |
6451695 |
T |
|
| Q |
201 |
cggtgaacaagcccttaagtttccaccacctcaagtaattagaggtactttattcatcttaatcaaaccacctacctatagttaacatgttcgtcacact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451694 |
cggtgaacaagcccttaagtttccaccacctcaagtaattagaggtactttattcatcttaatcaaaccacctacctatagttaacatgttcgtcacact |
6451595 |
T |
|
| Q |
301 |
cacatattatagtattagcatatcaaacaacataaaactcgtattttcttctca |
354 |
Q |
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| T |
6451594 |
cacatattatagtattagcatatcaaacaacataaaactcgtatttttttctca |
6451541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 6457984 - 6457727
Alignment:
| Q |
1 |
cttatgtatggaataaagtcattgccacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcg |
100 |
Q |
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| T |
6457984 |
cttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcg |
6457885 |
T |
|
| Q |
101 |
atgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacaga |
200 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || ||||||||||||||| | ||||| || |
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| T |
6457884 |
atgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactga |
6457785 |
T |
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| Q |
201 |
cggtgaacaagcccttaagtttccaccacctcaagtaattagaggtactttattcatc |
258 |
Q |
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||||||||||| ||| ||||||||||| ||||| ||||| | |||||| || |||||| |
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| T |
6457784 |
cggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtaccttgttcatc |
6457727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 6264308 - 6264220
Alignment:
| Q |
73 |
ttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaat |
161 |
Q |
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| T |
6264308 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaat |
6264220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 9603448 - 9603701
Alignment:
| Q |
7 |
tatggaataaagtcattgccacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaag |
106 |
Q |
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||||||||||| |||||| | ||||| || || |||||||| |||||||||| |||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
9603448 |
tatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaag |
9603547 |
T |
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| Q |
107 |
tgcgtggactt-ttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtg |
205 |
Q |
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| T |
9603548 |
tgcgt-gacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttccgcactgatggtg |
9603646 |
T |
|
| Q |
206 |
aacaagcccttaagtttccaccacctcaagtaattagaggtactttattcatctt |
260 |
Q |
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|||||| ||| |||||||||||||| || ||||| |||||||| ||||| ||||| |
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| T |
9603647 |
aacaagtcctcaagtttccaccaccacatgtaatcagaggtacattattaatctt |
9603701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 42694025 - 42693925
Alignment:
| Q |
52 |
tctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatac |
151 |
Q |
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|||||||| |||||| | |||||||| || ||||||||||||||||| |||||||| | |||| | | || |||||||||||||| || |||||| ||| |
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| T |
42694025 |
tctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtac |
42693926 |
T |
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| Q |
152 |
t |
152 |
Q |
| |
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| |
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| T |
42693925 |
t |
42693925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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