View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14719_low_6 (Length: 345)
Name: NF14719_low_6
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14719_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 42594477 - 42594150
Alignment:
| Q |
19 |
ggattggcatagtttgtgatgttcttcatggtcaaagtcaacactcatcaaaggtatcctaatcctcttcattttctgtcagatcattttattaagtaaa |
118 |
Q |
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| T |
42594477 |
ggattggcatagtttgtgattttcttcatggtcaaagtcaacactcatcaaaggtatcctaatcctcttcatttggtgttagatcattttattaagtaaa |
42594378 |
T |
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| Q |
119 |
aaggaaaggatt-----tatttaccaattgcttgagaaagatgtactgttttgttttgttgatggaattttggtttttatggaacagaaaatcactagga |
213 |
Q |
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| T |
42594377 |
aaggaaaggaaaatcactaggaaccaattgtttgagaaagatgtactgttttgttttgttgatggaattttggtttttatggaacagaaaatcactagga |
42594278 |
T |
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| Q |
214 |
accttggagtaagcttctttggcattctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttttgtcctttgccac |
313 |
Q |
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| T |
42594277 |
accttggagtaagcttctctggcattctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttttgtcctttgccac |
42594178 |
T |
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| Q |
314 |
agagttcaagcaggagggacccaaatat |
341 |
Q |
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| T |
42594177 |
agagttcaagcaggagggacccaaatat |
42594150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 312
Target Start/End: Original strand, 4090435 - 4090608
Alignment:
| Q |
143 |
gcttgagaaagatgtactgttttgttttgttgatggaattttggtttttatg----gaacagaaaatcactaggaaccttggagtaagcttctttggcat |
238 |
Q |
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| T |
4090435 |
gcttgagaaagatgtatttttttgttttgttgatgaagttttggtttttatggaatgaacagaagatcactaggaaccttggatcaagcttctttgactt |
4090534 |
T |
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| Q |
239 |
tctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttttgtcctttgcca |
312 |
Q |
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| T |
4090535 |
tttatggtataccatcaaggacaatcgttgcacagtttcattgcttctgatttcagctttattctccttagcca |
4090608 |
T |
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