View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14719_low_8 (Length: 300)

Name: NF14719_low_8
Description: NF14719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14719_low_8
NF14719_low_8
[»] chr7 (6 HSPs)
chr7 (19-212)||(5568243-5568433)
chr7 (200-300)||(5568450-5568550)
chr7 (196-298)||(3615236-3615338)
chr7 (140-187)||(35611219-35611266)
chr7 (233-300)||(35611258-35611325)
chr7 (166-219)||(19005420-19005473)
[»] chr4 (2 HSPs)
chr4 (196-300)||(9981226-9981330)
chr4 (204-300)||(20855643-20855740)
[»] scaffold1903 (1 HSPs)
scaffold1903 (213-300)||(337-424)
[»] chr3 (4 HSPs)
chr3 (199-300)||(54670699-54670797)
chr3 (139-212)||(37460532-37460605)
chr3 (216-260)||(33130615-33130659)
chr3 (160-221)||(11458043-11458104)
[»] scaffold0197 (1 HSPs)
scaffold0197 (165-219)||(25986-26040)
[»] chr8 (1 HSPs)
chr8 (200-290)||(14735459-14735550)
[»] chr5 (1 HSPs)
chr5 (160-212)||(17851882-17851934)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 5568243 - 5568433
Alignment:
Q  19 gaagcaccatggtcttcaccacaccaaatcaagaagtatgtgcatgaattgcaaatcctgatgtaccatgactactaatccaaaagcttgcatttgtttg 118  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5568243 gaagcaccatggtcttcacc-----aaatcaagaagtatgtgcatgaattgcaaatcctgatgtaccatgactactaatccaaaagcttgcatttgtttg 5568337  T
Q  119 caaggctataattctcgaacgttgcttttctgacattagatgttttctaatg--acacatggaaacgactaaaatatctccaacggtagttaacta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| ||| |||||||||| || ||  ||||||||||||    
T  5568338 caaggctataattctcgaacgttgcttttctgacattagatgtttcctaatgacacacatgaaaatgactaaaataccttcagtggtagttaacta 5568433  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 5568450 - 5568550
Alignment:
Q  200 cggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaat 299  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  5568450 cggtagttaactaccgttgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcattcaat 5568549  T
Q  300 t 300  Q
    |    
T  5568550 t 5568550  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 3615338 - 3615236
Alignment:
Q  196 ccaacggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcatt 295  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||||||||||||    
T  3615338 ccaacggtagttaactatcgctgaatacttattagtcaaatgactacaaagtgcttccatcataggtcacaacaatacaaacaaaattttcagaagcatt 3615239  T
Q  296 caa 298  Q
    |||    
T  3615238 caa 3615236  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 35611219 - 35611266
Alignment:
Q  140 ttgcttttctgacattagatgttttctaatgacacatggaaacgacta 187  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  35611219 ttgcttttctgacattagatgtttcctaatgacacatggaaatgacta 35611266  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 35611258 - 35611325
Alignment:
Q  233 aaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaatt 300  Q
    |||||||||||||||||| ||||| ||||| |||  |||  ||||||||||||| |||||| ||||||    
T  35611258 aaatgactacaaagtgcttccatcgcaggttacaacaatttaaacaaaattttcggaagcaatcaatt 35611325  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 19005473 - 19005420
Alignment:
Q  166 taatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctga 219  Q
    |||| ||||||||||| | |||||||| || || ||||||||||||||||||||    
T  19005473 taataacacatggaaatgtctaaaataccttcagcggtagttaactaccgctga 19005420  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 9981226 - 9981330
Alignment:
Q  196 ccaacggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcatt 295  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  9981226 ccaacagtagttaactaccgatgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcatt 9981325  T
Q  296 caatt 300  Q
    |||||    
T  9981326 caatt 9981330  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 20855740 - 20855643
Alignment:
Q  204 agttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggt--cacagtaatacaaacaaaattttcagaagcattcaatt 300  Q
    |||||||||||| ||||||||||||| |||||||||||| | |||||  ||||||||||  |||||  ||||||||||||||||||||| || ||||||    
T  20855740 agttaactaccgttgaatacttgttaatcaaatgactac-aggtgctttcatcacaggtcacacagccatacaaacaaaattttcagaaacaatcaatt 20855643  T

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Target: scaffold1903 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 337 - 424
Alignment:
Q  213 ccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaatt 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  337 ccgctgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcattcaatt 424  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 54670699 - 54670797
Alignment:
Q  199 acggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaa 298  Q
    |||||| ||||||| |||||||||||||||| |||||||||||| |||||||  ||||||||||||||   ||||||||||||||||||||| || ||||    
T  54670699 acggtaattaactatcgctgaatacttgttaatcaaatgactac-aagtgctttcatcacaggtcaca--tatacaaacaaaattttcagaaacaatcaa 54670795  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 37460605 - 37460532
Alignment:
Q  139 gttgcttttctgacattagatgttttctaatgacacatggaaacgactaaaatatctccaacggtagttaacta 212  Q
    |||||||||||||||| | |||||| ||||||||||| | ||| ||| ||| || ||||| |||||||||||||    
T  37460605 gttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaacta 37460532  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 33130659 - 33130615
Alignment:
Q  216 ctgaatacttgttagtcaaatgactacaaagtgctaccatcacag 260  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||    
T  33130659 ctgaatacttattagtcaaatgactaccaagtgcttccatcacag 33130615  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 11458104 - 11458043
Alignment:
Q  160 gttttctaatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctgaat 221  Q
    |||| ||||| ||||||||||| ||| ||| || | ||||||||||||||| ||||||||||    
T  11458104 gtttcctaataacacatggaaatgacgaaattacccccaacggtagttaaccaccgctgaat 11458043  T

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Target: scaffold0197 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 25986 - 26040
Alignment:
Q  165 ctaatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctga 219  Q
    ||||| ||||||||||| | | |||||| ||||||||||||||||||||||||||    
T  25986 ctaataacacatggaaatgtcaaaaatacctccaacggtagttaactaccgctga 26040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 14735550 - 14735459
Alignment:
Q  200 cggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcaca--gtaatacaaacaaaattttcagaa 290  Q
    ||||||| |||| ||| ||||||||||||| |||||||||||||| |||||   |||||| ||||||  |  |||||||||||||||||||||    
T  14735550 cggtagtcaactgccgttgaatacttgttaatcaaatgactacaa-gtgcttatatcacatgtcacaccgccatacaaacaaaattttcagaa 14735459  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 17851882 - 17851934
Alignment:
Q  160 gttttctaatgacacatggaaacgactaaaatatctccaacggtagttaacta 212  Q
    |||||||||| ||| ||||||| ||| ||| || |||||||||||||||||||    
T  17851882 gttttctaataacatatggaaatgacaaaattacctccaacggtagttaacta 17851934  T

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