View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1471_low_1 (Length: 253)
Name: NF1471_low_1
Description: NF1471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1471_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 31409738 - 31409586
Alignment:
| Q |
99 |
ctaattaagttactccggatttgttacgaaatctccttataaaaggacataactcgcctacctgattccacacactgaaaatcattctta---------- |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31409738 |
ctaattaagttactccggatttgttacgaaatttccctataaaaggacataactcggctacctgattccacacactgaaaatcattcttatacttcaaat |
31409639 |
T |
|
| Q |
189 |
-----tcctctccctcattcctttcacttgtgttgacgagtccttctcctcct |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31409638 |
tcttctcctctccctccttcctttcacttgtgttgatgagtccttctcctcct |
31409586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 50098760 - 50098802
Alignment:
| Q |
103 |
ttaagttactccggatttgttacgaaatctccttataaaagga |
145 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
50098760 |
ttaagtcactccggatttgttacaaactctccttataaaagga |
50098802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University