View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14720_high_2 (Length: 319)

Name: NF14720_high_2
Description: NF14720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14720_high_2
NF14720_high_2
[»] scaffold0024 (2 HSPs)
scaffold0024 (10-198)||(151355-151543)
scaffold0024 (229-277)||(151276-151324)
[»] chr3 (4 HSPs)
chr3 (95-138)||(35990540-35990583)
chr3 (101-135)||(18180546-18180580)
chr3 (103-140)||(12929819-12929856)
chr3 (104-136)||(42088735-42088767)
[»] chr8 (8 HSPs)
chr8 (99-141)||(33697153-33697195)
chr8 (95-138)||(6501496-6501539)
chr8 (93-127)||(2512761-2512795)
chr8 (98-140)||(3508056-3508098)
chr8 (87-132)||(2648269-2648314)
chr8 (98-135)||(6252511-6252548)
chr8 (88-136)||(10170403-10170451)
chr8 (87-135)||(14227215-14227263)
[»] chr1 (4 HSPs)
chr1 (101-139)||(52097738-52097776)
chr1 (95-138)||(43328468-43328511)
chr1 (95-135)||(26462663-26462703)
chr1 (99-135)||(43609836-43609872)
[»] chr6 (4 HSPs)
chr6 (99-148)||(2140486-2140535)
chr6 (95-141)||(11779388-11779434)
chr6 (102-138)||(10620646-10620682)
chr6 (87-127)||(17168489-17168529)
[»] chr5 (7 HSPs)
chr5 (87-140)||(31614129-31614182)
chr5 (87-137)||(4206319-4206369)
chr5 (101-138)||(2611095-2611132)
chr5 (102-135)||(30267541-30267574)
chr5 (87-136)||(42626767-42626815)
chr5 (100-140)||(18607110-18607150)
chr5 (95-135)||(21577126-21577166)
[»] chr7 (4 HSPs)
chr7 (101-140)||(9483391-9483430)
chr7 (102-139)||(505093-505130)
chr7 (95-136)||(41360911-41360952)
chr7 (95-135)||(16341497-16341537)
[»] chr4 (1 HSPs)
chr4 (95-141)||(5654603-5654649)
[»] chr2 (3 HSPs)
chr2 (94-127)||(4690290-4690323)
chr2 (95-135)||(19613631-19613671)
chr2 (95-135)||(28369823-28369863)
[»] scaffold0205 (1 HSPs)
scaffold0205 (102-138)||(21424-21460)


Alignment Details
Target: scaffold0024 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 151543 - 151355
Alignment:
10 attatacttgacactggtaatttgagaaaatggaatagctgaatgtaactacaacacggacaccgaaattgatacttacacgacaacactgataataatt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
151543 attatacttgacactggtaatttgagaaaatggaatagctgaatgtaactacgacacggacaccaaaattgatacttacacgacaacaccgataataatt 151444  T
110 tgagaaaataaaataattaaatgtaaccatacatatcaacatcatgtcaatgtcgatgctacatagatctgaactccaagaacatgctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
151443 tgagaaaataaaataattaaatgtaaccatacatatcaacatcatgtcaatgtcgatgctacatagatctgtactccaagaacatgctt 151355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 151324 - 151276
Alignment:
229 ttatgtatattaatatgttatcatcagaaacccagaatcaaatcaacgc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
151324 ttatgtatattaatatgttatcatcagaaacccagaatcaaatcaacgc 151276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 35990583 - 35990540
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaacca 138  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
35990583 acactgataataatttgagaaaataaaataactgaatgtaacca 35990540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 18180546 - 18180580
Alignment:
101 ataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||||| ||||||||||||||||    
18180546 ataataatttgagaaaatgaaataattaaatgtaa 18180580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 12929856 - 12929819
Alignment:
103 aataatttgagaaaataaaataattaaatgtaaccata 140  Q
    ||||||||||||||||||||||| | ||||||||||||    
12929856 aataatttgagaaaataaaataaatgaatgtaaccata 12929819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 42088735 - 42088767
Alignment:
104 ataatttgagaaaataaaataattaaatgtaac 136  Q
    |||||||||||||||||||||||| ||||||||    
42088735 ataatttgagaaaataaaataattgaatgtaac 42088767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 33697195 - 33697153
Alignment:
99 tgataataatttgagaaaataaaataattaaatgtaaccatac 141  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
33697195 tgataataatttgagaaaataaaataattgaatataaccatac 33697153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 6501496 - 6501539
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaacca 138  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||    
6501496 acactggtaataatttgagagaatgaaataattaaatgtaacca 6501539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 2512761 - 2512795
Alignment:
93 caacactgataataatttgagaaaataaaataatt 127  Q
    |||||||| ||||||||||||||||||||||||||    
2512761 caacactggtaataatttgagaaaataaaataatt 2512795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 3508056 - 3508098
Alignment:
98 ctgataataatttgagaaaataaaataattaaatgtaaccata 140  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||    
3508056 ctgataataatttgagaaaataacataattcaatgtaatcata 3508098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 2648314 - 2648269
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataattaaatg 132  Q
    ||||| ||||||  |||||||||||||||||||| |||||||||||    
2648314 acacgtcaacaccaataataatttgagaaaataacataattaaatg 2648269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 6252548 - 6252511
Alignment:
98 ctgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||||||||||  |||||||||||||    
6252548 ctgataataatttgagaaaataatttaattaaatgtaa 6252511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 10170451 - 10170403
Alignment:
88 cacgacaacactgataataatttgagaaaataaaataattaaatgtaac 136  Q
    |||| ||||||  ||||||||||||||||||||| ||||| ||||||||    
10170451 cacgtcaacaccaataataatttgagaaaataaattaattgaatgtaac 10170403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 14227215 - 14227263
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    ||||| ||||||  |||||||||||||||||||| |||||| |||||||    
14227215 acacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 52097738 - 52097776
Alignment:
101 ataataatttgagaaaataaaataattaaatgtaaccat 139  Q
    ||||||| |||||||||||||||||||||||||||||||    
52097738 ataataaattgagaaaataaaataattaaatgtaaccat 52097776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 43328468 - 43328511
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaacca 138  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||    
43328468 acacttataataatttgagaaaatgaaataatttaatgtaacca 43328511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 26462703 - 26462663
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
26462703 acactgataataatttaagaaaatgaaataattgaatgtaa 26462663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 43609872 - 43609836
Alignment:
99 tgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||||||||| |||||| |||||||    
43609872 tgataataatttgagaaaataacataattgaatgtaa 43609836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 2140535 - 2140486
Alignment:
99 tgataataatttgagaaaataaaataattaaatgtaaccatacatatcaa 148  Q
    |||||||||||||||||||| | |||||| |||||||| |||||||||||    
2140535 tgataataatttgagaaaatgacataattcaatgtaactatacatatcaa 2140486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 11779434 - 11779388
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaaccatac 141  Q
    |||| |||||||||||||||||||||||||  | |||||||||||||    
11779434 acacggataataatttgagaaaataaaatatatgaatgtaaccatac 11779388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 10620646 - 10620682
Alignment:
102 taataatttgagaaaataaaataattaaatgtaacca 138  Q
    |||||||||||||||||| |||||||||| |||||||    
10620646 taataatttgagaaaatagaataattaaaagtaacca 10620682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 17168529 - 17168489
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataatt 127  Q
    ||||| |||||||||||||||||||||||||| | ||||||    
17168529 acacgccaacactgataataatttgagaaaatgatataatt 17168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 31614129 - 31614182
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataattaaatgtaaccata 140  Q
    |||| ||||||||||||||| ||||||||||| |||||| ||| ||||||||||    
31614129 acacaacaacactgataatagtttgagaaaatgaaataactaattgtaaccata 31614182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 4206319 - 4206369
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataattaaatgtaacc 137  Q
    ||||| |||||| | ||||||||||||||||||||||| || |||||||||    
4206319 acacgtcaacaccgttaataatttgagaaaataaaatatttgaatgtaacc 4206369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 2611132 - 2611095
Alignment:
101 ataataatttgagaaaataaaataattaaatgtaacca 138  Q
    ||||||||||||||||||||||| ||| ||||||||||    
2611132 ataataatttgagaaaataaaattattgaatgtaacca 2611095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 30267574 - 30267541
Alignment:
102 taataatttgagaaaataaaataattaaatgtaa 135  Q
    ||||||||||||||||||| ||||||||||||||    
30267574 taataatttgagaaaataatataattaaatgtaa 30267541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 42626767 - 42626815
Alignment:
87 acacgacaacactgataataatttgagaaaataaaataattaaatgtaac 136  Q
    ||||| ||| || |||||||||||||||||||||||| ||||||||||||    
42626767 acacgtcaataccgataataatttgagaaaataaaat-attaaatgtaac 42626815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 18607150 - 18607110
Alignment:
100 gataataatttgagaaaataaaataattaaatgtaaccata 140  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
18607150 gataataatttgagaaaataacataattcaatgtaatcata 18607110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 21577166 - 21577126
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
21577166 acaccgataataatttgagaaaataacataattaagtgtaa 21577126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 9483391 - 9483430
Alignment:
101 ataataatttgagaaaataaaataattaaatgtaaccata 140  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
9483391 ataataatttgagaaaatagaataattgaatgtaaccata 9483430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 505130 - 505093
Alignment:
102 taataatttgagaaaataaaataattaaatgtaaccat 139  Q
    ||||||||| ||||||| ||||||||||||||||||||    
505130 taataatttaagaaaatgaaataattaaatgtaaccat 505093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 41360911 - 41360952
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaac 136  Q
    ||||||||| |||||||||||||||| |||||| ||||||||    
41360911 acactgatattaatttgagaaaataacataattcaatgtaac 41360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 16341497 - 16341537
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||||||||||| | |||||||| |||||    
16341497 acactgataataatttgagaaaatcacataattaagtgtaa 16341537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 5654649 - 5654603
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaaccatac 141  Q
    |||||||||||||||||||||||| | |||||| ||||||| |||||    
5654649 acactgataataatttgagaaaatgacataattcaatgtaatcatac 5654603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 4690290 - 4690323
Alignment:
94 aacactgataataatttgagaaaataaaataatt 127  Q
    ||||||||||||||||||||||||||| ||||||    
4690290 aacactgataataatttgagaaaataacataatt 4690323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 19613671 - 19613631
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    ||||| |||||||||||||||||||| |||||| |||||||    
19613671 acactcataataatttgagaaaataacataattcaatgtaa 19613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 28369863 - 28369823
Alignment:
95 acactgataataatttgagaaaataaaataattaaatgtaa 135  Q
    |||||||||||||||||||||||| || ||| |||||||||    
28369863 acactgataataatttgagaaaatgaattaaataaatgtaa 28369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 21424 - 21460
Alignment:
102 taataatttgagaaaataaaataattaaatgtaacca 138  Q
    ||||| |||||||||||||||||||| ||||||||||    
21424 taatagtttgagaaaataaaataattgaatgtaacca 21460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University