View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14720_high_9 (Length: 205)
Name: NF14720_high_9
Description: NF14720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14720_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 41954611 - 41954778
Alignment:
| Q |
21 |
tgtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatct |
120 |
Q |
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| T |
41954611 |
tgtgacaactgtttgattgttttgtggtggtggctcgggtggtggtcgcatcgacggaagagaaagcttggcggcggctcgtggttgagaaagaagatct |
41954710 |
T |
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| Q |
121 |
ctggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctact |
188 |
Q |
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| T |
41954711 |
ctggtgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaagatgctcctact |
41954778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 35706855 - 35706692
Alignment:
| Q |
22 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
121 |
Q |
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| T |
35706855 |
gtgacagccatttgattgttttgtggtggtggctcgggtggtggtcgcatcggtagaaaggaaagcttggcggtggctcgtggttgagaaagaagatctc |
35706756 |
T |
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| Q |
122 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcct |
185 |
Q |
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| T |
35706755 |
tggtgagtgagaaagattctggaaaagaatgaagagatagttgaggggaaaggagggtgctcct |
35706692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 11789305 - 11789471
Alignment:
| Q |
22 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
121 |
Q |
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| T |
11789305 |
gtgacaaccatttgattgttttgttgtggtggctcgggtggtggtcgcatcggcgggaaggaaagcttggcggcacctggtagtggggaagaaagatctt |
11789404 |
T |
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| Q |
122 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctact |
188 |
Q |
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| T |
11789405 |
tggtgagtgagaaagaaaatggaaaaggatgaagagatagttgaggggaaaggaggatgctcctact |
11789471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 7202592 - 7202755
Alignment:
| Q |
22 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
121 |
Q |
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| T |
7202592 |
gtgacagccatttgattgttttgtggtggtggctcgggggacggtcgcatcggcgaaaaggaaggtttcgcgacgactcgtggtagagaaagaagatatg |
7202691 |
T |
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| Q |
122 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctact |
188 |
Q |
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| T |
7202692 |
ta---agtgagaaaggatctggaaaaggatgtagagatagttgaggggaaaggatgatgctcctact |
7202755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 36136923 - 36136776
Alignment:
| Q |
40 |
ttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctggcgagtgagaaaggtt |
139 |
Q |
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|||||||||||||||||||||||||||||||||| || ||| ||| ||||||| | | ||| |||| ||||||| |||||||||| | |||| |||| || |
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| T |
36136923 |
ttttgtggtggtggctcgggtggtggtcgcatcggcggaagagaaggcttggcagtgactcatggtggagaaaggagatctctggtgtgtgaaaaagatt |
36136824 |
T |
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| Q |
140 |
ctggtaaaggatgaagagataattgaggggaaaggaggatgctcctac |
187 |
Q |
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|| |||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
36136823 |
atgaaaaaggatgaagagatagttgagggaaaaggaggatcctcctac |
36136776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 30401806 - 30401969
Alignment:
| Q |
24 |
gacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctg |
123 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||| ||| | || || |||| ||| |||||||||||||| ||||||| ||||| | |
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| T |
30401806 |
gacaaccatttcattgttttgtggtggtggctcgggtggtggtcacataggcggaaaggaagacttagcggcggctcgtggcggagaaaggagatcatcg |
30401905 |
T |
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| Q |
124 |
gcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctac |
187 |
Q |
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| T |
30401906 |
gtgagtgagaaaaattctagaaaaggatgaagagatagatgagtggaaatgacgatgctcctac |
30401969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 2545476 - 2545337
Alignment:
| Q |
45 |
tggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctggcgagtgagaaaggttctggt |
144 |
Q |
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| T |
2545476 |
tggtggtggttcgggtggtggtcgcataggcggaaaggaagacttagcgacggctcgtggtggagaaaggagatcattggtgagtgagaaaaattctaga |
2545377 |
T |
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| Q |
145 |
aaaggatgaagagataattgaggggaaaggaggatgctcc |
184 |
Q |
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|||||||||||||||| |||||||||| || |||||||| |
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| T |
2545376 |
aaaggatgaagagatagatgaggggaaatgaagatgctcc |
2545337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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