View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14720_low_2 (Length: 475)
Name: NF14720_low_2
Description: NF14720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14720_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 20362356 - 20361898
Alignment:
| Q |
1 |
aattatgagacatgaatttagcaacggaagtaataaatgactgtgacataacaacttctagtcattcaatgggagcagacataatggttcgcggatcaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362356 |
aattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggagcagacataatggttcgcggatcaaa |
20362257 |
T |
|
| Q |
101 |
ttaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcccaattacacagaaataccatggtacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362256 |
ttaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcccaattacacagaaataccatggtacat |
20362157 |
T |
|
| Q |
201 |
aaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaaacaagcatattcatggcaggtagattcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20362156 |
aaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaaacaagcatatccatggcaggtagattcct |
20362057 |
T |
|
| Q |
301 |
gcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgtacggtaaaatgaaaagatgggta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362056 |
gcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgtacggtaaaatgaaaagatgggta |
20361957 |
T |
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| Q |
401 |
tgttgttatgattactaaccataaccataaccataaccatggcggggtgtattaggttttgatga |
465 |
Q |
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| T |
20361956 |
tgttgttatgattactaaccataaccataa------ccatggcggggtgtattaggttttaatga |
20361898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 283 - 428
Target Start/End: Complemental strand, 21549882 - 21549737
Alignment:
| Q |
283 |
catggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgtacggt |
382 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
21549882 |
catggcaggtagattcctgcaaaaggaatgcataattaagggttaggggcataccgatgtgattaaatataatgcagcagcagcaacgtatatgtatggt |
21549783 |
T |
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| Q |
383 |
aaaatgaaaagatgggtatgttgttatgattactaaccataaccat |
428 |
Q |
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| T |
21549782 |
aaaatgaaaagatggatatgttgttatgattactaaccataaccat |
21549737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21550062 - 21549882
Alignment:
| Q |
1 |
aattatgagacatgaattt--agcaacggaagtaataaatgactgtgacataacaacttctagtcattcaatgggag------cagacataatggttcgc |
92 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
21550062 |
aattatgagacatgaatttttagcaatggaagtaataaatgactatgacataacaacttggagtcattcaatgggagaaaatacaggcataatggttcgc |
21549963 |
T |
|
| Q |
93 |
ggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc |
173 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549962 |
agatcaaattaagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc |
21549882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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