View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14720_low_4 (Length: 290)
Name: NF14720_low_4
Description: NF14720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14720_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 9821766 - 9822001
Alignment:
| Q |
18 |
attctccaagatgtttagaataattcaaaatccaagagtctaccnnnnnnncactcgattcttaacttttgactagctaagagttctttattttgatgaa |
117 |
Q |
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| T |
9821766 |
attctccaaggtgtttagaataattcaaaatccaagagtgtaccacaaaaacactcgattcttaacttttgactagctaagaattttttattttgatgaa |
9821865 |
T |
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| Q |
118 |
gcctagtttgcttcactcctacttcaagttagaactgaaaacaagtgtcttgtatatataggcatcgttgagttcgccttgtgcttcaaaaacagttttg |
217 |
Q |
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| T |
9821866 |
gcctagtttgcttcactcttacctcaagttagaactgaaaacaagtgtcttgtatatataggcatcgttgagttcgccttgtgcttcaaaaacagttttg |
9821965 |
T |
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| Q |
218 |
cggcccatcaaacttgtcgaagaagaaaactaaacc |
253 |
Q |
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| T |
9821966 |
cggcccatcaaacttgtcgaagaagaaaactaaacc |
9822001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 38984861 - 38985082
Alignment:
| Q |
19 |
ttctccaagatgtttagaataattcaaaatccaagagtctaccnnnnnnncactcgattcttaacttttgactagctaagagttctttattttgatgaag |
118 |
Q |
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||||||||| ||||||||||||||| |||||||| |||||||| ||||| |||||||| |||| |||| |||||| ||| ||||||||||| | |
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| T |
38984861 |
ttctccaaggtgtttagaataattccaaatccaa-agtctaccacaaaa-cactcaattcttaaattttaactacctaagaattccctattttgatgagg |
38984958 |
T |
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| Q |
119 |
cctagtttgcttcactcctacttcaagttagaactgaaaacaagtgtcttgtatatataggcatcgttgagttcgccttgtgcttcaaaaacagttttgc |
218 |
Q |
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| T |
38984959 |
tctagtttgctc----------tcaagttagaacttaaaacaagtgtcctgtatatacaagcaccactgagtttgccttgtgctttagaaatagttttgc |
38985048 |
T |
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| Q |
219 |
ggcccatcaaacttgtcgaagaagaaaactaaac |
252 |
Q |
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||||||||||| || ||||| |||||||| |||| |
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| T |
38985049 |
ggcccatcaaatttatcgaacaagaaaacaaaac |
38985082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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