View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14720_low_7 (Length: 237)
Name: NF14720_low_7
Description: NF14720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14720_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2069452 - 2069233
Alignment:
| Q |
1 |
caagcgaatattcaagtttcagactttgaggagactccttctgatactcacatattggttggtaatacatcagttcctccgcattgtgtggcgcctatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
2069452 |
caagcgaatattcaagtttcagactttgaggagactccttctgatactcacattttggttggtaatacatcaattcctctgcattgtgtggcgcctatac |
2069353 |
T |
|
| Q |
101 |
aaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttctactattcttcaaagagataatgatttaattgagcaagatttggct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2069352 |
aaagagacattgatgttattagcgcagacaaggtctcaggcgccctccttgttctactattcttcaaagagataatgatttaattgagcaagatttggct |
2069253 |
T |
|
| Q |
201 |
ttggaccgttaacatcattc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2069252 |
ttggaccgttaacatcattc |
2069233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2073798 - 2073579
Alignment:
| Q |
1 |
caagcgaatattcaagtttcagactttgaggagactccttctgatactcacatattggttggtaatacatcagttcctccgcattgtgtggcgcctatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2073798 |
caagcgaatattcaagtttcagactttgaggagactccttctgatactcacattttggttggtaatacatcaattcctccgcattgtgtggcgcctatac |
2073699 |
T |
|
| Q |
101 |
aaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttctactattcttcaaagagataatgatttaattgagcaagatttggct |
200 |
Q |
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|
||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2073698 |
aaagagacattcatgttattagcgcggacaaggtctcaggcgccctccttgttctactattcttcaaagagataatgatttaattgagcaagatttggct |
2073599 |
T |
|
| Q |
201 |
ttggaccgttaacatcattc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2073598 |
ttggaccgttaacatcattc |
2073579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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