View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_high_11 (Length: 239)
Name: NF14721_high_11
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_high_11 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 56066749 - 56066936
Alignment:
| Q |
16 |
catctataataatgtaggttaaatatttacactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
115 |
Q |
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| T |
56066749 |
catctataataatgtaggtaaaatatt-acactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
56066847 |
T |
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| Q |
116 |
ttttaatttaaaataaataattttgacccctcaaatttatcttattttgcatttaccaatcaggaaaagcttgctggtacaacaaatac |
204 |
Q |
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| T |
56066848 |
ttttaatttaaaataaataattttgacccctcaaatttatcttattttgcatttaccaatcaggaaaagcttgctggtacaacaaatac |
56066936 |
T |
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Target: scaffold0446 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 1306 - 1485
Alignment:
| Q |
16 |
catctataataatgtaggttaaatatttacactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
115 |
Q |
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| T |
1306 |
catctataataatgtaggtaaaatatt-acactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
1404 |
T |
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| Q |
116 |
ttttaatttaaaataaataattttgacccctcaaatttatcttattttgcatttaccaat-caggaaaagcttgctggtac |
195 |
Q |
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| T |
1405 |
ttttaatttaaaataaataattttgacccctcaaatttatcttattttgcatttaccaatccaggaaaagcttgctggtac |
1485 |
T |
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