View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14721_high_13 (Length: 235)

Name: NF14721_high_13
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14721_high_13
NF14721_high_13
[»] chr4 (2 HSPs)
chr4 (1-221)||(38477330-38477560)
chr4 (95-221)||(18301061-18301193)
[»] chr7 (3 HSPs)
chr7 (95-221)||(6945936-6946068)
chr7 (95-221)||(48941633-48941765)
chr7 (95-136)||(19761702-19761742)
[»] chr3 (1 HSPs)
chr3 (95-221)||(13233226-13233358)
[»] chr6 (1 HSPs)
chr6 (95-221)||(19676365-19676497)
[»] chr1 (1 HSPs)
chr1 (106-221)||(4268223-4268338)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38477560 - 38477330
Alignment:
Q  1 tgatataaagataaataaaatccttcgaaatactatg-aaaccttatag------nnnnnnnnnnnngaagaagaagaatatgtaaacctaatgnnnnnn 93  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                  |||||||||||||||||||||||||||          
T  38477560 tgatataaagataaataaaatccttcgaaatactatgtaaaccttatagtttttcttttctgaagaagaagaagaagaatatgtaaacctaatg-aaaaa 38477462  T
Q  94 ncttcttgtttgatacaaactaaatacaacgaatccat---tatttgacgaagt-aaaataaatctatgtaacatgagacaattcatccttttattcgcg 189  Q
     |||||||||||||||||| ||||||||||||||||||   ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||    
T  38477461 acttcttgtttgatacaaattaaatacaacgaatccattactatttgatgaagtaaaaataaatctatgtaacatgagtcaattcatccttttattcacg 38477362  T
Q  190 atcgtattatatttgtttgatacactcttgtc 221  Q
    ||||||||||||||||||||||||||||||||    
T  38477361 atcgtattatatttgtttgatacactcttgtc 38477330  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 18301193 - 18301061
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattatttg------acgaagtaaaa-taaatctatgtaacatgagacaattcatccttttattcg 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||      ||||||||||| ||||||||||||||||||| |||| |||||||||||||     
T  18301193 cttcttgtttgatacaaactaaatacaac-aatccattatttgtatttgacgaagtaaaaataaatctatgtaacatgagtcaatccatccttttattca 18301095  T
Q  188 cgatcgtattatatttgtttgatacactcttgtc 221  Q
    |||||||||||||||||||||||||||| |||||    
T  18301094 cgatcgtattatatttgtttgatacactgttgtc 18301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 6945936 - 6946068
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattatttg------acgaagtaaaa-taaatctatgtaacatgagacaattcatccttttattcg 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||      ||||||||||| ||||||||||||||||||| |||| |||||||||||||     
T  6945936 cttcttgtttgatacaaactaaatacaac-aatccattatttgtatttgacgaagtaaaaataaatctatgtaacatgagtcaatccatccttttattca 6946034  T
Q  188 cgatcgtattatatttgtttgatacactcttgtc 221  Q
    |||||||||||||||||||||||||||| |||||    
T  6946035 cgatcgtattatatttgtttgatacactgttgtc 6946068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 48941765 - 48941633
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattatttg------acgaagtaaa-ataaatctatgtaacatgagacaattcatccttttattcg 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||      |||||||||| |||||||||||||||||||| |||| |||||||||||||     
T  48941765 cttcttgtttgatacaaactaaatacaac-aatccattatttgtatttgacgaagtaaagataaatctatgtaacatgagtcaatccatccttttattca 48941667  T
Q  188 cgatcgtattatatttgtttgatacactcttgtc 221  Q
    |||||||||||||||||||||||||||| |||||    
T  48941666 cgatcgtattatatttgtttgatacactgttgtc 48941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 19761702 - 19761742
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattattt 136  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  19761702 cttcttgtttgatacaaactaaatacaac-aatccattattt 19761742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 13233358 - 13233226
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattatttg------acgaagtaaaa-taaatctatgtaacatgagacaattcatccttttattcg 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||      ||||||||||| ||||||||||||||||||| |||| |||||||||||||     
T  13233358 cttcttgtttgatacaaactaaatacaac-aatccattatttgtatttgacgaagtaaaaataaatctatgtaacatgagtcaatccatccttttattca 13233260  T
Q  188 cgatcgtattatatttgtttgatacactcttgtc 221  Q
    |||||||||||||||||||||||||||| |||||    
T  13233259 cgatcgtattatatttgtttgatacactgttgtc 13233226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 19676365 - 19676497
Alignment:
Q  95 cttcttgtttgatacaaactaaatacaacgaatccattatttg------acgaagtaaaa-taaatctatgtaacatgagacaattcatccttttattcg 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||      ||||||||||| ||||||||||||||||||| ||||  ||||||||||||     
T  19676365 cttcttgtttgatacaaactaaatacaac-aatccattatttgtatttgacgaagtaaaaataaatctatgtaacatgagtcaatctatccttttattca 19676463  T
Q  188 cgatcgtattatatttgtttgatacactcttgtc 221  Q
    |||||||||||||||||||||||||||| |||||    
T  19676464 cgatcgtattatatttgtttgatacactgttgtc 19676497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 4268338 - 4268223
Alignment:
Q  106 atacaaactaaatacaacgaatccattatttgacgaagta-aaataaatctatgtaacatgagacaattcatccttttattcgcgatcgtattatatttg 204  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||  ||| |||||||| |||||||||||||||||    
T  4268338 atacaaactaaatacaac-aatccattatttgatgaagtacaaataaatctatgtaacatgagtcaatctatcattttattcacgatcgtattatatttg 4268240  T
Q  205 tttgatacactcttgtc 221  Q
    ||||||| ||| |||||    
T  4268239 tttgatatactgttgtc 4268223  T

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