View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_high_5 (Length: 464)
Name: NF14721_high_5
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_high_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 325 - 464
Target Start/End: Complemental strand, 48871028 - 48870889
Alignment:
| Q |
325 |
gagttatttgtgtttatgtatatctattttttctacattaggtccagccaatgctttgtatgaatcaattatgccagtcttaaattttctttgatactgt |
424 |
Q |
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| T |
48871028 |
gagttatttgtatttatgtatatctattttttctacattaggtccagccaatgctttgtatgaatcaattatgccagtcttaaattttctttgatactgt |
48870929 |
T |
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| Q |
425 |
ttaggttcgactaaattatatttgaccgatcaaattcttt |
464 |
Q |
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| T |
48870928 |
ttaggttcgactaaattatatttgaccgatcaaattcttt |
48870889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 48871297 - 48871171
Alignment:
| Q |
64 |
tttataaaatgacat--ttgaatgcaaaccatatgtgttggtgtgttggcgctatgtaagttttttattttgttctttaaaaccttttggcctaggcatt |
161 |
Q |
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| T |
48871297 |
tttataaaatgacatatttgaatgtaa-ccatatgtgttggtgtgttggtgctatgtaagttttttattttgttctttaaaaccttttggcctaggcatt |
48871199 |
T |
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| Q |
162 |
gtaatcataatgataacaatattaacag |
189 |
Q |
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| T |
48871198 |
gtaatcataatgataacaatattaacag |
48871171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 48871472 - 48871402
Alignment:
| Q |
1 |
gactaagaagtggtgacatagaatattagatacgacatagattctgacacgttccgtggtaattttataaa |
71 |
Q |
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| T |
48871472 |
gactaagaagtggtgacacataatattagatacgatatagattcttacacgttccatggtaattttataaa |
48871402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 2904247 - 2904294
Alignment:
| Q |
404 |
ttaaattttctttgatactgtttaggttcgactaaattatatttgacc |
451 |
Q |
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| T |
2904247 |
ttaaattttctttgatactgtttaggttcaactaaattatttttgacc |
2904294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 2888118 - 2888186
Alignment:
| Q |
383 |
tatgaatcaattatgccagtcttaaattttctttgatactgtttaggttcgactaaattatatttgacc |
451 |
Q |
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| T |
2888118 |
tatgaatcaattagattagttttaaattttctttgatactgtataggttcaactaaattatttttgacc |
2888186 |
T |
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