View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_low_1 (Length: 571)
Name: NF14721_low_1
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 209 - 554
Target Start/End: Complemental strand, 37445957 - 37445614
Alignment:
| Q |
209 |
ctcatcactctctttctcagttcgtgcttctaaattaatttccttcattaatattacgtgcattatattaaggcattcattttctcccactnnnnnnnnn |
308 |
Q |
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| T |
37445957 |
ctcatcactctctttctcagttcgtgcttctaaattaatttccttcattaatattacgtgcattatattaaggcattcattatctcccactacacacaca |
37445858 |
T |
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| Q |
309 |
nnnnnnngtaccatgcatgttttgtatatggaggcatttactgaacaacattaatttggtattttatctcttctaattaatgtcaggataattatctgaa |
408 |
Q |
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| T |
37445857 |
cacac--gtaccatgcatgttttgtatatggaggcatttactgaacaacattaattttgtattttatctcttctaattaatgtcaggataattatctgaa |
37445760 |
T |
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| Q |
409 |
gttgagagaaatatccaagcatacgctacccctcgggttgaaactcacattgactcctgagatgcttccattcacagaacaaaacatgaacgatgatact |
508 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37445759 |
gttgagagaaatatcccagcatacgctacccctcgggttgaaactcacattgactcctgagatgcttccattcacagaacaaaacatgaacgatgatact |
37445660 |
T |
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| Q |
509 |
aaaatcacaacttcattcaaactagaagaaattaagaaagttgaga |
554 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37445659 |
aaaatcacaacttcattccaactagaagaaattaagaaagttgaga |
37445614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 37446151 - 37446006
Alignment:
| Q |
14 |
caaagcgaaccatataaaactcattcctctctagtatccacacttgaaacgggtcctatatatggaacacattaacgagtatgactggaacatgactcac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37446151 |
caaagcgaaccatataaaactcattcctctctagtatccacacttgaaacgggtcctatatatggaacacattaacgagtatgactggaacatgactcac |
37446052 |
T |
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| Q |
114 |
ttactatccaacaatgatgatgctcaaactacatataatatggtac |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37446051 |
ttactatccaacaatgatgatgctcaaactacatataatatggtac |
37446006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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