View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_low_11 (Length: 319)
Name: NF14721_low_11
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_11 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 3643100 - 3643405
Alignment:
| Q |
1 |
aagagacaagtagttgtgagaagatcagaagatccacaaagaagtgttgtgaaatatggagagtgtcagaagaatcatgcagctaatgttggaggttatg |
100 |
Q |
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| T |
3643100 |
aagagacaagtagttgtgagaagatcagaagatccacaaagaagtgtagtgaaatatggagagtgtcagaagaatcatgcagctaatgttggaggttatg |
3643199 |
T |
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| Q |
101 |
ctgttgatggttgtagagagttcatgccaagtacaaatggttctctcacttgtgctgcttgtggttgtcacagaaactttcacaaaagagaagttgaagt |
200 |
Q |
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| T |
3643200 |
ctgttgatggttgtagagagttcatgccaagtacaaatggttctctcacttgtgctgcttgtggttgtcacagaaactttcacaaaagagaagttgaagt |
3643299 |
T |
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| Q |
201 |
tgtttctgagagttcttcacctcattcaaatggtacttgaaactgttttataactataccttatatggtattcttgtaatatatttgtgttttgcttgtg |
300 |
Q |
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| T |
3643300 |
tgtttctgagagttcttcacctcattcaaatggtacttgaaactgtttcataactataccttatatggtattcttgtaatatatttgtgttttgcttgtg |
3643399 |
T |
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| Q |
301 |
ttatat |
306 |
Q |
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|||||| |
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| T |
3643400 |
ttatat |
3643405 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 13902387 - 13902315
Alignment:
| Q |
54 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgtagagagttcatg |
126 |
Q |
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| T |
13902387 |
atatggtgagtgtcaaaagaatcatgcagcaaatattggagggtatgctgtagatggttgcagagagttcatg |
13902315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 32791 - 32852
Alignment:
| Q |
54 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgta |
115 |
Q |
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||||||||||||||| ||||||||||||||| || |||||| |||||||||||||| |||| |
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| T |
32791 |
atatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatggatgta |
32852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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