View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14721_low_15 (Length: 238)

Name: NF14721_low_15
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14721_low_15
NF14721_low_15
[»] chr5 (6 HSPs)
chr5 (16-165)||(34985563-34985708)
chr5 (164-225)||(2842399-2842460)
chr5 (164-222)||(2852545-2852603)
chr5 (164-222)||(20406945-20407003)
chr5 (164-222)||(34986000-34986058)
chr5 (180-222)||(42867049-42867091)
[»] chr1 (9 HSPs)
chr1 (16-165)||(37382231-37382377)
chr1 (163-222)||(50986491-50986550)
chr1 (164-222)||(11166300-11166358)
chr1 (164-222)||(35567440-35567498)
chr1 (164-222)||(37382677-37382735)
chr1 (164-222)||(41768747-41768805)
chr1 (114-165)||(4296661-4296712)
chr1 (164-223)||(10724825-10724884)
chr1 (164-203)||(4296312-4296351)
[»] chr8 (3 HSPs)
chr8 (16-162)||(37742641-37742785)
chr8 (164-222)||(13439096-13439154)
chr8 (164-222)||(44842571-44842629)
[»] chr4 (4 HSPs)
chr4 (32-163)||(14199396-14199526)
chr4 (18-130)||(37080012-37080124)
chr4 (164-222)||(14199884-14199942)
chr4 (164-222)||(36040101-36040159)
[»] chr7 (4 HSPs)
chr7 (164-222)||(29054277-29054335)
chr7 (164-222)||(46372214-46372272)
chr7 (165-222)||(46741930-46741987)
chr7 (114-165)||(46372575-46372626)
[»] chr6 (2 HSPs)
chr6 (164-222)||(17003301-17003359)
chr6 (164-222)||(25461100-25461158)
[»] chr3 (11 HSPs)
chr3 (164-222)||(4330268-4330326)
chr3 (164-222)||(16860264-16860322)
chr3 (164-222)||(42374251-42374309)
chr3 (166-222)||(36100012-36100068)
chr3 (16-66)||(42374878-42374928)
chr3 (16-66)||(42403592-42403642)
chr3 (114-164)||(16859886-16859936)
chr3 (164-222)||(21626771-21626829)
chr3 (16-66)||(16859801-16859851)
chr3 (164-203)||(21336098-21336137)
chr3 (74-150)||(42374619-42374691)
[»] chr2 (1 HSPs)
chr2 (164-203)||(13099185-13099224)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 34985563 - 34985708
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggttttannnnnnnatgcataacaatttcggctttgtaaataaaatnnnnnnnnct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||| ||||||||||||||||         ||    
T  34985563 attctgagagtgagagaattgagaatatggtttagtatcagtttagttttatttttttatgcataacaatttgggctttgtaaataaaa----aaaaact 34985658  T
Q  116 atgtttttagttaaaccacaacaattaaagtaatagcataaagtgaattt 165  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34985659 atgtttttagttaaaccacaacaagtaaagtaatagcataaagtgaattt 34985708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 2842460 - 2842399
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagactga 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2842460 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagactga 2842399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 2852603 - 2852545
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2852603 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 2852545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 20407003 - 20406945
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407003 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 20406945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 34986000 - 34986058
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986000 ttgttgttgctgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 34986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 42867091 - 42867049
Alignment:
Q  180 taatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  42867091 taatggaaacaaaatatgtaaagaacttgacctcaatgaagac 42867049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 37382231 - 37382377
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggttttannnnnnnatgcataacaatttcggctttgtaaataaaatnnnnnnnnct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||| ||||||||||||||||         ||    
T  37382231 attctgagagtgagagaattgagaatatggtttagtatcagtttggttttatttttttatgcataataatttgggctttgtaaataaaa---aaaaaact 37382327  T
Q  116 atgtttttagttaaaccacaacaattaaagtaatagcataaagtgaattt 165  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37382328 atgtttttagttaaaccacaacaagtaaagtaatagcataaagtgaattt 37382377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 50986491 - 50986550
Alignment:
Q  163 tttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50986491 tttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 50986550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 11166358 - 11166300
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166358 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 11166300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 35567440 - 35567498
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35567440 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 35567498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 37382677 - 37382735
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37382677 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 37382735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 41768747 - 41768805
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768747 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 41768805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 4296712 - 4296661
Alignment:
Q  114 ctatgtttttagttaaaccacaacaattaaagtaatagcataaagtgaattt 165  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4296712 ctatgtttttagttaaaccacaacaagtaaagtaatagcataaagtgaattt 4296661  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 10724825 - 10724884
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagact 223  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||    
T  10724825 ttgttgttgttgcatgtaatgaaaacataatatgtaaagaacttgacctggaagaagact 10724884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 4296351 - 4296312
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4296351 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 4296312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 37742641 - 37742785
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggttttannnnnnnatgcataacaatttcggctttgtaaataaaatnnnnnnnnct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||         ||    
T  37742641 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta-ttttttatgcataacaatttgggctttgtaaataaaa-ataaaaaact 37742738  T
Q  116 atgtttttagttaaaccacaacaattaaagtaatagcataaagtgaa 162  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  37742739 atgtttttagttaaaccacaacaagtaaagtaatagcataaagtgaa 37742785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 13439096 - 13439154
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13439096 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 13439154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 44842629 - 44842571
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44842629 ttgttgttgttgcatgtaatggaaacaaaatatgtaaggaacttgaccttgatgaagac 44842571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 14199396 - 14199526
Alignment:
Q  32 aattgagaatatggtttagtatcagtttggttttannnnnnnatgcataacaatttcggctttgtaaataaaatnnnnnnnnctatgtttttagttaaac 131  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  14199396 aattgagaatatggtttagtatcagtttggttttatttttttatgcataacaatttcggctttgtaaataaaa-aaaaaaaactatgtttttagttaaac 14199494  T
Q  132 cacaacaattaaagtaatagcataaagtgaat 163  Q
    |||||||| |||||||||||||||||||||||    
T  14199495 cacaacaagtaaagtaatagcataaagtgaat 14199526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 37080012 - 37080124
Alignment:
Q  18 tctgagagtgagagaattgagaatatggtttagtatcagtttggttttannnnnnnatgcataacaatttcggctttgtaaataaaatnnnnnnnnctat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||        ||||    
T  37080012 tctgagagtgagagaattgagaatatggtttagtatcagtttggttttatttttttatgcataacaatttgggctttgtaaataaaataaaaaaaactat 37080111  T
Q  118 gtttttagttaaa 130  Q
    |||||||||||||    
T  37080112 gtttttagttaaa 37080124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 14199884 - 14199942
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199884 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 14199942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 36040159 - 36040101
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040159 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 36040101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 29054335 - 29054277
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054335 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 29054277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 46372272 - 46372214
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46372272 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 46372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 46741987 - 46741930
Alignment:
Q  165 tgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46741987 tgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 46741930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 46372626 - 46372575
Alignment:
Q  114 ctatgtttttagttaaaccacaacaattaaagtaatagcataaagtgaattt 165  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  46372626 ctatgtttttagttaaaccacaacaagtgaagtaatagcataaagtgaattt 46372575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 17003301 - 17003359
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003301 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 17003359  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 25461100 - 25461158
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25461100 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 25461158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 4330268 - 4330326
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4330268 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 4330326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 16860264 - 16860322
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16860264 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 16860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 42374309 - 42374251
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42374309 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 42374251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 36100068 - 36100012
Alignment:
Q  166 gttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100068 gttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 36100012  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 42374928 - 42374878
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42374928 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta 42374878  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 42403642 - 42403592
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42403642 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta 42403592  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 16859886 - 16859936
Alignment:
Q  114 ctatgtttttagttaaaccacaacaattaaagtaatagcataaagtgaatt 164  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16859886 ctatgtttttagttaaaccacaacaagtaaagtaatagcataaagtgaatt 16859936  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 21626771 - 21626829
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaacttgaccttgatgaagac 222  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  21626771 ttgttgttgttgcatgtaatggaaacaaaatatataagcaacttgaccttgatgaagac 21626829  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 16859801 - 16859851
Alignment:
Q  16 attctgagagtgagagaattgagaatatggtttagtatcagtttggtttta 66  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  16859801 attctcagagtgaaagaattgagaatatggtttagtatcagtttggtttta 16859851  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 21336098 - 21336137
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21336098 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 21336137  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 42374691 - 42374619
Alignment:
Q  74 atgcataacaatttcggctttgtaaataaaatnnnnnnnnctatgtttttagttaaaccacaacaattaaagtaata 150  Q
    |||||||||||||| ||||||||||||||||          ||||||||||||||||||||||||| ||||||||||    
T  42374691 atgcataacaatttgggctttgtaaataaaaaaaaat----tatgtttttagttaaaccacaacaagtaaagtaata 42374619  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 13099185 - 13099224
Alignment:
Q  164 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13099185 ttgttgttgttgcatgtaatggaaacaaaatatgtaaaga 13099224  T

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