View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14721_low_17 (Length: 226)
Name: NF14721_low_17
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_17 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 48873688 - 48873469
Alignment:
| Q |
7 |
ataccgagactcaaaggtgaaattttgccacttcacagagccactcaacctgaaagacagtctgaaaaaaccaagcatgagaaccactcagctaggcttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48873688 |
ataccgagactcaaaggtgaaattttgccacttcacagagccgctcaacctgaacgacggtctgaaaaaaccaagcatgagaaccattcagctaggcttg |
48873589 |
T |
|
| Q |
107 |
taagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacatatatgtaaaaggtctga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
48873588 |
taagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacatacatataaaaggtctga |
48873489 |
T |
|
| Q |
207 |
caaaaataacaccaccaata |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48873488 |
caaaaataacaccaccaata |
48873469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 48878992 - 48878773
Alignment:
| Q |
7 |
ataccgagactcaaaggtgaaattttgccacttcacagagccactcaacctgaaagacagtctgaaaaaaccaagcatgagaaccactcagctaggcttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48878992 |
ataccgagactcaaaggtgaaattttgccacttcacagagccgctcaacctgaacgacggtctgaaaaaaccaagcatgagaaccattcagctaggcttg |
48878893 |
T |
|
| Q |
107 |
taagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacatatatgtaaaaggtctga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
48878892 |
taagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacatacatataaaaggtctga |
48878793 |
T |
|
| Q |
207 |
caaaaataacaccaccaata |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48878792 |
caaaaataacaccaccaata |
48878773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 48866715 - 48866529
Alignment:
| Q |
7 |
ataccgagactcaaaggtgaaattttgccacttcacagagccactcaacctgaaagacagtctgaaaaaacc---aagcatgagaaccactcagctaggc |
103 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |||| ||||||||||| || |||||| ||||| |||| ||||||||| |||||||||| |
|
|
| T |
48866715 |
atacctagactcaaaggtgaaactttgccacttcacaaagccgctcaacctgaactacggtctgacaaaacttataagcgtgagaaccattcagctaggc |
48866616 |
T |
|
| Q |
104 |
ttgtaagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacata |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
48866615 |
ttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcagccttgaaaacata |
48866529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 48841751 - 48841918
Alignment:
| Q |
24 |
tgaaattttgccacttcacagagccactcaacctgaaagacagtctgaaaaaaccaagcatgagaaccactcagctaggcttgtaagcctgaaataggca |
123 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| |||| || | |||| | | || ||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48841751 |
tgaagttttgccacttcacaaagccgttcaacatgaaccacggcctgacagagcccagcataagaaccactcagctaggcttgttagcctgaaataggca |
48841850 |
T |
|
| Q |
124 |
aacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagccttgaaaacatat |
191 |
Q |
| |
|
||||| | | ||||||||| ||||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
48841851 |
aacacaaaaataaggccctctataattcaattgggcaaaagattgcttccacaaccttgaaaacatat |
48841918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 48892767 - 48892697
Alignment:
| Q |
33 |
gccacttcacagagccactcaacctgaaagacagtctgaaaaaaccaagcatgagaaccactcagctaggc |
103 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| | |||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
48892767 |
gccacttcacaaagcctctcaacctgaaagactgcctgacaaagccaagcatgagaaccgctcagctaggc |
48892697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 35647227 - 35647366
Alignment:
| Q |
77 |
ccaagcatgagaaccactcagctaggcttgtaagcctgaaataggcaaacaccagagtaaggccct--aattaattcaattgggaaagaggttgcttcca |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||| ||| || || |||||||||||| |
|
|
| T |
35647227 |
ccaagcatgagaaccactcagctaggcttgttagcctgaaataggcaaacaccaaagtaaggccctctatataattgaatgaggcaaaaggttgcttcca |
35647326 |
T |
|
| Q |
175 |
cagccttgaaaacatatatgtaaaaggtctgacaaaaataa |
215 |
Q |
| |
|
|| | |||||| || |||| |||||| |||||||||||||| |
|
|
| T |
35647327 |
caactttgaaa-caaatatataaaagctctgacaaaaataa |
35647366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University