View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14721_low_18 (Length: 213)

Name: NF14721_low_18
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14721_low_18
NF14721_low_18
[»] chr4 (3 HSPs)
chr4 (1-198)||(21833450-21833647)
chr4 (57-173)||(53761012-53761128)
chr4 (113-159)||(7308309-7308355)
[»] chr1 (1 HSPs)
chr1 (35-150)||(19467623-19467738)
[»] chr6 (2 HSPs)
chr6 (35-144)||(6588459-6588568)
chr6 (42-173)||(6416809-6416940)
[»] chr3 (2 HSPs)
chr3 (42-179)||(51763583-51763720)
chr3 (42-173)||(13469857-13469988)
[»] chr7 (1 HSPs)
chr7 (50-163)||(10615440-10615553)
[»] chr5 (1 HSPs)
chr5 (35-144)||(28532580-28532689)
[»] chr8 (3 HSPs)
chr8 (106-159)||(17635904-17635957)
chr8 (106-179)||(18318891-18318964)
chr8 (106-179)||(18314885-18314958)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21833450 - 21833647
Alignment:
Q  1 cttatatagtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccata 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  21833450 cttatatggtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccata 21833549  T
Q  101 aacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttc 198  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||  ||||||||||||    
T  21833550 aacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttc 21833647  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 53761012 - 53761128
Alignment:
Q  57 cacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccat 156  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||| |   ||||| |||||||||||||| ||||||||||| |||||| |||| | |||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcat 53761111  T
Q  157 catgtttgattgtgatc 173  Q
    | ||||| | |||||||    
T  53761112 cttgtttaactgtgatc 53761128  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 7308355 - 7308309
Alignment:
Q  113 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 159  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcat 7308309  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 19467623 - 19467738
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| | |    ||||  |||| |||||||| || ||||    
T  19467623 ggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaatt 19467722  T
Q  135 gtaagcttcttgaaga 150  Q
    ||||||||||||||||    
T  19467723 gtaagcttcttgaaga 19467738  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 6588459 - 6588568
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | ||||| ||||| |||||| ||||||| || |||||||||||||||  ||| ||||| |||| |||||| |||||||||||||| || ||||    
T  6588459 ggggtacaggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaatt 6588558  T
Q  135 gtaagcttct 144  Q
    ||||||||||    
T  6588559 gtaagcttct 6588568  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 6416940 - 6416809
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    ||||||| |||||||||||| | |||||||| || |||||||||||| | || ||  ||||||  ||||| |||||||| || ||  | || ||||||||    
T  6416940 aagctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagct 6416841  T
Q  142 tcttgaagaagccatcatgtttgattgtgatc 173  Q
    ||| ||||||| ||||||||||  ||||||||    
T  6416840 tctcgaagaagtcatcatgtttagttgtgatc 6416809  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 51763583 - 51763720
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| |||||||||  |||||||||| |||||| ||||||||| |  ||   || ||||||||    
T  51763583 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 51763682  T
Q  142 tcttgaagaagccatcatgtttgattgtgatcaaataa 179  Q
    |||  |||| | |||||||||||| |||||||||||||    
T  51763683 tctccaagatgtcatcatgtttgactgtgatcaaataa 51763720  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 13469857 - 13469988
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| | || || |||||||  | ||| ||||||||||| ||  | || ||||||||    
T  13469857 aagctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagct 13469956  T
Q  142 tcttgaagaagccatcatgtttgattgtgatc 173  Q
    ||| ||||||| ||||||||||  ||||||||    
T  13469957 tctcgaagaagtcatcatgtttagttgtgatc 13469988  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 10615553 - 10615440
Alignment:
Q  50 tcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaag 149  Q
    |||||| ||||| | |||||||| ||||||||||||||| | || | |||||||| |||||| ||| |||||||| |  | || ||||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttcttgaag 10615454  T
Q  150 aagccatcatgttt 163  Q
    | | |||| |||||    
T  10615453 aggtcatcttgttt 10615440  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 28532689 - 28532580
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | ||||| |||||| |||||  ||||||||| |||||||||||||||  ||| ||||| ||||  ||||| |||||||||||||| |  || |    
T  28532689 ggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaact 28532590  T
Q  135 gtaagcttct 144  Q
    ||||||||||    
T  28532589 gtaagcttct 28532580  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 159  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 18318891 - 18318964
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 179  Q
    |||||| ||| |||||||||| ||||| || |||||||| ||||| ||||||||  |||| |||||||||||||    
T  18318891 tcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatacttgactgtgatcaaataa 18318964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 18314885 - 18314958
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 179  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| | ||| |||||||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataa 18314958  T

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