View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14721_low_3 (Length: 549)

Name: NF14721_low_3
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14721_low_3
NF14721_low_3
[»] chr4 (20 HSPs)
chr4 (67-536)||(5552626-5553095)
chr4 (67-530)||(5853335-5853798)
chr4 (157-519)||(5857641-5858006)
chr4 (1-72)||(5552524-5552595)
chr4 (128-222)||(3748464-3748558)
chr4 (342-521)||(5539598-5539777)
chr4 (169-219)||(5564317-5564367)
chr4 (171-285)||(5558528-5558642)
chr4 (431-525)||(5895379-5895473)
chr4 (454-519)||(5564602-5564667)
chr4 (171-285)||(5571697-5571811)
chr4 (128-286)||(5613080-5613238)
chr4 (436-521)||(5571461-5571546)
chr4 (169-225)||(5605003-5605059)
chr4 (342-521)||(5558699-5558878)
chr4 (342-525)||(5848315-5848498)
chr4 (425-520)||(5886539-5886634)
chr4 (131-285)||(5539834-5539988)
chr4 (431-507)||(5613383-5613459)
chr4 (169-225)||(5895679-5895735)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 67 - 536
Target Start/End: Original strand, 5552626 - 5553095
Alignment:
Q  67 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagctagtaagaatattgtgagaaatatttagcttatcaagatatggt 166  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  5552626 atgaaggtcaagaagtataaggttgggaatatgattcgtcattggtctttgaaagttagtaagaaaattgtgagaaatatttagcttatcaagatatggt 5552725  T
Q  167 aatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttt 266  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5552726 agtttccaaatccagtttggtactattccatgaatctggttatctgaaaggtctagagagcccaatccggattggttaatcaagaaattaggaaatgttt 5552825  T
Q  267 taaagttgcaggatgccaaacctaaaacatcaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 366  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5552826 taaagttgcaggatgccaaacctaaaacattaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 5552925  T
Q  367 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaagatcaaggcgataaagtgaaccaagc 466  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5552926 atggagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagacgaaagatcaaggcgataaagtgaaccaagc 5553025  T
Q  467 tgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaagggattctaatatagagg 536  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5553026 tgcaatatagattttggaaaaggccctgattgatcattgcttcttaattcaagggattctaatatagagg 5553095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 67 - 530
Target Start/End: Complemental strand, 5853798 - 5853335
Alignment:
Q  67 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagctagtaagaatattgtgagaaatatttagcttatcaagatatggt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||| ||||||||||||||    
T  5853798 atgaaagtcaagaagtataaggttgggaatatgattcttcattggtctttgaaagttagtgagaaaattgtgagaaatctttagcgtatcaagatatggt 5853699  T
Q  167 aatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttt 266  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  5853698 agtttccaaatccagtttggtactattccatgaatctggttatctgaaaggtctagataacccaattcggattggttaatcaagaaactaggaaatgttt 5853599  T
Q  267 taaagttgcaggatgccaaacctaaaacatcaatgttgggaatagaaagtaaatcataatttgaagcattccaactgattgataagttgttgtatgaaag 366  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  5853598 taaagttgcaggatgccaaacctagaacattaattttgggaatagaaagtaaatcataatttaaagcattccaactgattgataagtcgttatatgaaag 5853499  T
Q  367 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaagatcaaggcgataaagtgaaccaagc 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5853498 atgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaagatcaaggcgataaagtgaaccaagc 5853399  T
Q  467 tgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaagggattctaata 530  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  5853398 tgcaatatagattttggaaaaggccctgatagatcattgcttcttaaatcaagggattctaata 5853335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 157 - 519
Target Start/End: Original strand, 5857641 - 5858006
Alignment:
Q  157 aagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaatta 256  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||  ||||||||| ||||||||| ||    
T  5857641 aagatatggtagtttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaacta 5857740  T
Q  257 ggaaatgttttaaagttgcaggatgccaaacctaaaacatcaatgttgggaatagaaagtaaatcataatttgaagcattccaactg---attgataagt 353  Q
    || |  ||||| ||||||||||||||||| | || ||| |||| ||||||||| | |   | ||||  ||||||| | || | | ||   ||||||||||    
T  5857741 gggatagttttcaagttgcaggatgccaatcttagaacgtcaaagttgggaatcgtagacagatcaacatttgaaccttttccattgattattgataagt 5857840  T
Q  354 tgttgtatgaaagatgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaagatcaaggcgata 453  Q
    ||||||||||||| | ||    | ||||  || | ||  ||||||||| ||||| ||||| |||| || | ||||||||||| ||||| |||||   |||    
T  5857841 tgttgtatgaaaggtataaactagttaagtttttgagctcaaaaagtttatctagttggagggattcattaaacttgttagacgaaaggtcaagtgaata 5857940  T
Q  454 aagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaag 519  Q
    ||||||||| ||||| |  || ||| |||||||||||||||||| || |||||| ||||| |||||    
T  5857941 aagtgaaccgagctgaacaatggatattggaaaaggccctgataaatcattgctgcttaaatcaag 5858006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5552524 - 5552595
Alignment:
Q  1 attaccaatatcttgtggaatactagaaaaactgtttgttgagtaatccaaataaatagcagattgatgaaa 72  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  5552524 attaccaatatcttgtggaatactagaaaaattgtttgttgagtaatccaaataaataacagattgatgaaa 5552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 3748464 - 3748558
Alignment:
Q  128 agaatattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctag 222  Q
    |||| ||||||||||||||| ||    || |||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3748464 agaagattgtgagaaatattaagagcttctagatatggcagtttccaaacccaatttggtactattccttgaatctggttatctgaaaggtctag 3748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 521
Target Start/End: Complemental strand, 5539777 - 5539598
Alignment:
Q  342 tgattgataagttgttgtatgaaagatgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaag 441  Q
    ||||||||| ||||||||||||||| | |||| || ||||| || | ||    ||||| |||||||| || |   ||||| | ||| ||||| |||||||    
T  5539777 tgattgatatgttgttgtatgaaaggtctagtgcagttaaatttcttagcttcaaaagctcatctaactgcagcaatccattcaacctgttaaaggaaag 5539678  T
Q  442 atcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaaggg 521  Q
    ||| |||  | ||||||||| |||||| || |||||| ||||||||| ||||||||||| |||||| ||||| |||||||    
T  5539677 atcgaggacagaaagtgaacgaagctggaagatagatgttggaaaagaccctgatagattattgctacttaaatcaaggg 5539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 5564317 - 5564367
Alignment:
Q  169 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtc 219  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5564317 tttccaaatccaatttggtactattccttgaatctggttatttgaaaggtc 5564367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 5558528 - 5558642
Alignment:
Q  171 tccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttttaaa 270  Q
    ||||||||||||| || |||| ||| ||||| |||||| ||||||||||||||  |   ||   ||||||||| |||||||||||||| || ||||| ||    
T  5558528 tccaaatccaattgggcactactccgtgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaa 5558627  T
Q  271 gttgcaggatgccaa 285  Q
    |||||||| ||||||    
T  5558628 gttgcaggttgccaa 5558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 525
Target Start/End: Complemental strand, 5895473 - 5895379
Alignment:
Q  431 ttagaggaaagatcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaagggattc 525  Q
    |||||||||||||  |||  | |||||||||  ||||| || |||||| ||||||||||||||||||||| |||||| ||||| |||||| ||||    
T  5895473 ttagaggaaagatagaggaaagaaagtgaacggagctggaagatagatgttggaaaaggccctgatagattattgctacttaaatcaaggaattc 5895379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 519
Target Start/End: Original strand, 5564602 - 5564667
Alignment:
Q  454 aagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaag 519  Q
    ||||||||||||||| || |||||| |||||||||| || |||||||||||||| ||||| |||||    
T  5564602 aagtgaaccaagctgaaagatagatgttggaaaaggaccagatagatgattgctgcttaaatcaag 5564667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 5571811 - 5571697
Alignment:
Q  171 tccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagcccaattcggattggttaatcaagaaattaggaaatgttttaaa 270  Q
    |||||||||| || || |||||||| |||||||| |||| ||| |||||||||  || ||||  ||||| |||  |||||||| |||| || ||||| |     
T  5571811 tccaaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcag 5571712  T
Q  271 gttgcaggatgccaa 285  Q
    |||||||||||||||    
T  5571711 gttgcaggatgccaa 5571697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 286
Target Start/End: Original strand, 5613080 - 5613238
Alignment:
Q  128 agaatattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagc 227  Q
    |||| |||||| |||||||| ||||  ||||||  | ||| |||||||||||||||||| || | ||| ||||| |||||  ||||||||||||||        
T  5613080 agaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatttggcacaactccttgaatttggttggctgaaaggtctagatttt 5613179  T
Q  228 ccaattcggattggttaatcaagaaattaggaaatgttttaaagttgcaggatgccaaa 286  Q
    |||||   ||||| ||  |||||||  ||||||| ||||| | ||||||||||||||||    
T  5613180 ccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgccaaa 5613238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 521
Target Start/End: Complemental strand, 5571546 - 5571461
Alignment:
Q  436 ggaaagatcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaaggg 521  Q
    ||||||||| |||  ||||||||| |  | ||| || |||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  5571546 ggaaagatcgaggacataaagtgatctgaactggaagatagatgttggaaaaggccctgatagattattgctacttaaatcaaggg 5571461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 5605003 - 5605059
Alignment:
Q  169 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaga 225  Q
    ||||||||||||||| || |||| ||| ||||| | |||||||||||||||||||||    
T  5605003 tttccaaatccaattcggcactactccttgaatgttgttatctgaaaggtctagaga 5605059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 521
Target Start/End: Original strand, 5558699 - 5558878
Alignment:
Q  342 tgattgataagttgttgtatgaaagatgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaag 441  Q
    ||||||||| |||||| |||||||| | |||| || ||||| || ||||  | ||||||| |||||  || |  || ||| | ||| |||||||||||||    
T  5558699 tgattgatatgttgttatatgaaaggtttagtgcagttaaatttctaagctccaaaagtttatctagatgcagtgacccattcaacctgttagaggaaag 5558798  T
Q  442 atcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaaggg 521  Q
    ||| |||  | ||||||||| |||| | || |||||| |||||| || ||||| ||||| ||| || ||||| |||||||    
T  5558799 atcgaggacagaaagtgaacgaagcaggaagatagatgttggaacagaccctgctagattatttctacttaaatcaaggg 5558878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 525
Target Start/End: Complemental strand, 5848498 - 5848315
Alignment:
Q  342 tgattgataagttgttgtatgaaagatgtagttcacttaaacttgtaaggccaaaaagttcatctaattggacggatccagtgaacttgttagaggaaag 441  Q
    ||||||||| |||||||||||||||   ||| ||| ||||| || ||||  | ||||| |||||||  || |  || ||| | ||| | ||||| |||||    
T  5848498 tgattgatatgttgttgtatgaaagggttaggtcagttaaatttctaagctccaaaagctcatctagctgcattgacccattcaacctattagatgaaag 5848399  T
Q  442 atcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaagggattc 525  Q
    ||| |||  | |||||||||  | ||| || | |||| ||||||||||||||||||||| |||||| ||||| |||||| ||||    
T  5848398 atcgaggaaaaaaagtgaacggaactggaagagagatgttggaaaaggccctgatagattattgctacttaaatcaaggaattc 5848315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 520
Target Start/End: Complemental strand, 5886634 - 5886539
Alignment:
Q  425 aacttgttagaggaaagatcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgcttcttaattcaagg 520  Q
    ||||||||||||||||||   |||  | ||||||||   ||||| || |||||| |||||||||||||||||| || |||||| ||||| ||||||    
T  5886634 aacttgttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaagg 5886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 5539988 - 5539834
Alignment:
Q  131 atattgtgagaaatatttagcttatcaagatatggtaatttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagagagccca 230  Q
    ||||||||||||| ||| || || | ||||| | |||  ||||| ||||| || || ||| |||||||||| || |||| |||||||||||||  |  ||    
T  5539988 atattgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttca 5539889  T
Q  231 attcggattggttaatcaagaaattaggaaatgttttaaagttgcaggatgccaa 285  Q
    ||  ||||| |||  |||||||| |||| || ||||| | |||||||||||||||    
T  5539888 atctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgccaa 5539834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 507
Target Start/End: Original strand, 5613383 - 5613459
Alignment:
Q  431 ttagaggaaagatcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatgattgct 507  Q
    |||||||||||||  |||  | |||||||||  || || || |||||| ||||||||||||||||||||| ||||||    
T  5613383 ttagaggaaagatggaggatagaaagtgaacggagttggaagatagatgttggaaaaggccctgatagattattgct 5613459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 5895735 - 5895679
Alignment:
Q  169 tttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaga 225  Q
    ||||||||||||||| || |||  ||| ||||| ||||||| |||||||||||||||    
T  5895735 tttccaaatccaattgggcactgctccttgaatttggttatgtgaaaggtctagaga 5895679  T

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