View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14721_low_4 (Length: 515)

Name: NF14721_low_4
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14721_low_4
NF14721_low_4
[»] chr1 (3 HSPs)
chr1 (12-200)||(18513819-18514012)
chr1 (16-102)||(12786237-12786327)
chr1 (97-127)||(24007325-24007355)
[»] chr7 (9 HSPs)
chr7 (26-191)||(3312552-3312718)
chr7 (26-109)||(3310934-3311017)
chr7 (143-191)||(3310866-3310914)
chr7 (76-132)||(16250385-16250442)
chr7 (15-102)||(18147606-18147697)
chr7 (15-92)||(33721245-33721324)
chr7 (43-127)||(13695830-13695916)
chr7 (43-127)||(13696038-13696124)
chr7 (143-196)||(34706801-34706856)
[»] chr3 (11 HSPs)
chr3 (79-200)||(32657267-32657390)
chr3 (12-196)||(18705523-18705707)
chr3 (15-183)||(3592994-3593163)
chr3 (26-140)||(18534434-18534549)
chr3 (25-200)||(3262264-3262442)
chr3 (76-175)||(24177926-24178025)
chr3 (16-125)||(30993240-30993352)
chr3 (27-127)||(3483604-3483706)
chr3 (69-192)||(32658576-32658705)
chr3 (15-83)||(15777344-15777412)
chr3 (15-127)||(3290608-3290723)
[»] scaffold0281 (1 HSPs)
scaffold0281 (15-127)||(1821-1935)
[»] chr4 (8 HSPs)
chr4 (15-192)||(25126238-25126416)
chr4 (15-136)||(19611924-19612046)
chr4 (12-193)||(18552312-18552493)
chr4 (15-74)||(23974154-23974213)
chr4 (50-178)||(14645677-14645805)
chr4 (77-200)||(44277959-44278085)
chr4 (28-102)||(11153814-11153891)
chr4 (15-125)||(15706660-15706773)
[»] chr8 (6 HSPs)
chr8 (15-196)||(40391280-40391465)
chr8 (15-127)||(17290600-17290715)
chr8 (93-175)||(42147389-42147470)
chr8 (15-53)||(42147468-42147506)
chr8 (47-102)||(9883636-9883692)
chr8 (16-93)||(6465713-6465791)
[»] scaffold0088 (1 HSPs)
scaffold0088 (20-191)||(35497-35673)
[»] chr2 (3 HSPs)
chr2 (15-117)||(16093511-16093615)
chr2 (15-79)||(32623604-32623669)
chr2 (15-74)||(27386940-27387000)
[»] scaffold0505 (1 HSPs)
scaffold0505 (110-193)||(4709-4793)
[»] scaffold0005 (1 HSPs)
scaffold0005 (50-124)||(171485-171558)
[»] scaffold0094 (1 HSPs)
scaffold0094 (50-126)||(48232-48310)
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-80)||(182968-183034)
[»] chr5 (2 HSPs)
chr5 (16-93)||(39435961-39436039)
chr5 (29-102)||(39176442-39176519)
[»] scaffold0815 (1 HSPs)
scaffold0815 (99-200)||(1252-1352)
[»] chr6 (5 HSPs)
chr6 (15-102)||(19769032-19769123)
chr6 (28-163)||(9548696-9548833)
chr6 (15-125)||(19566882-19566996)
chr6 (15-93)||(12987081-12987162)
chr6 (15-83)||(19892891-19892960)
[»] scaffold0323 (1 HSPs)
scaffold0323 (63-127)||(16222-16288)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 18513819 - 18514012
Alignment:
Q  12 agtgagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtatggggg-agtctctattca-cataagggttttatga 108  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||  || |||||| ||||| ||||| |||||||||||| |||||||||| |||||    
T  18513819 agtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaagggggaagtctctattcaccataagggttgtatga 18513918  T
Q  109 acatatgggtagtgaagggctt---gttttcttttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatttgttgttgt 200  Q
    |||||| ||||||||| || ||    ||||||| |  ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  18513919 acatataggtagtgaaaggtttatgattttcttct-tttgttttcatgatcttttaataaattcatgttaaatttatgctgtaatttgttgttgt 18514012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 12786327 - 12786237
Alignment:
Q  16 agaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggta--tgggggagtctctattca-cataagggtt 102  Q
    ||||||||||  |||||||||||||| ||| || ||||| |||||| |||||||||||||   ||||||||||||||||| ||||||||||    
T  12786327 agaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggtt 12786237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 24007325 - 24007355
Alignment:
Q  97 agggttttatgaacatatgggtagtgaaggg 127  Q
    |||||||||||||||||||||||||||||||    
T  24007325 agggttttatgaacatatgggtagtgaaggg 24007355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 3312718 - 3312552
Alignment:
Q  26 agagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatgggggagtctctattcacataagggttttatgaacatatgggtagtgaag 125  Q
    |||||||||||  ||| ||| || |||||||||| ||||||||||| || ||||||||||||||||| ||||||||| |||||| || ||||||||||||    
T  3312718 agagagagattcaaccgtaggaagtcatcaattcggcaaactagagataagggggagtctctattcatataagggttgtatgaatatgtgggtagtgaag 3312619  T
Q  126 ggcttgt-tttcttttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatt 191  Q
    || |||| ||| | ||  ||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  3312618 ggtttgtgtttttcttccttgttttcacgatcttttaatgaatttatgttatatttgtgctctaatt 3312552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 3311017 - 3310934
Alignment:
Q  26 agagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatgggggagtctctattcacataagggttttatgaa 109  Q
    |||||||||||  ||  ||| || ||||||||||  ||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  3311017 agagagagattcaacagtaggaagtcatcaattcgacaaactagaggtaagggggagtctctattcatataagggttgtatgaa 3310934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 3310914 - 3310866
Alignment:
Q  143 ttgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatt 191  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  3310914 ttgttttcacgatcttttaatgaatttatgttaaatttatgctctaatt 3310866  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 16250385 - 16250442
Alignment:
Q  76 gggggagtctctattca-cataagggttttatgaacatatgggtagtgaagggcttgt 132  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||| |||||| ||||    
T  16250385 gggggagtctctattcatcataagggttgtatgaacatgtgggtagcgaagggtttgt 16250442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 18147606 - 18147697
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggta--tgggggagtctctattca-cataagggtt 102  Q
    |||||||| ||||||||||||||| || ||| || ||||| |||||| | |||||||||||   ||||||||||||||||| ||||||||||    
T  18147606 gagaagaatctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggtt 18147697  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 33721324 - 33721245
Alignment:
Q  15 gagaagaacctagagagagatttc-accatagaaaatcatcaattctgc-aaactagaggtatgggggagtctctattca 92  Q
    |||||||||||||||||||||||| ||  |||||| ||||| ||||||| ||||||||| || |||||||| | ||||||    
T  33721324 gagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaactagagataagggggagtgtttattca 33721245  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 13695916 - 13695830
Alignment:
Q  43 tagaaaatcatcaattctgcaaactagaggtatgggg-gagtctctattca-cataagggttttatgaacatatgggtagtgaaggg 127  Q
    |||||| |||||||||| |||||||||||||| |||| |||||| | |||| || ||||| |  |||||||||| ||||||||||||    
T  13695916 tagaaattcatcaattcggcaaactagaggtaaggggagagtctatcttcaccacaagggatgcatgaacatatcggtagtgaaggg 13695830  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 13696124 - 13696038
Alignment:
Q  43 tagaaaatcatcaattctgcaaactagaggtatgggg-gagtctctattca-cataagggttttatgaacatatgggtagtgaaggg 127  Q
    |||||| |||||||||| |||||||||||| | |||| |||||| | |||| || ||||| |  |||||||||||||||||||||||    
T  13696124 tagaaattcatcaattcggcaaactagagggaaggggagagtctatcttcatcacaagggatgcatgaacatatgggtagtgaaggg 13696038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 34706856 - 34706801
Alignment:
Q  143 ttgttttcatgatcttttaatgaatt--catgttaaatttgtgctctaatttgttg 196  Q
    |||||||||| |||||||||||||||   |||||||||||||| |||| |||||||    
T  34706856 ttgttttcataatcttttaatgaattgagatgttaaatttgtgttctactttgttg 34706801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 32657267 - 32657390
Alignment:
Q  79 ggagtctctattcacataagggttttatgaacatatgggtagtgaagggcttgt-tttctt-ttaattgttttcatgatcttttaatgaattcatgttaa 176  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||    ||| |||||| ||  ||||||||||||||||||||||||||||||||||    
T  32657267 ggagtctctattcacataagggttgtatgaacatatgggtagtaaagaatctgtgtttcttcttctttgttttcatgatcttttaatgaattcatgttaa 32657366  T
Q  177 atttgtgctctaatttgttgttgt 200  Q
    ||||||||||||||| ||||||||    
T  32657367 atttgtgctctaattggttgttgt 32657390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 18705523 - 18705707
Alignment:
Q  12 agtgagaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatgggggagtctctattca-cataagggttttatgaa 109  Q
    |||||||||||| ||||||||||||||||||||  |||||||||| |||   |||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  18705523 agtgagaagaacgtagagagagatttcaccatatgaaatcatcaatttcgtaaaactagaggtatgggggagtctctatttaccataa-ggttgtatgaa 18705621  T
Q  110 catatgggtagtgaagggcttgt-tttcttttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatttgttg 196  Q
    |||| ||||||||||||| |||| ||| ||||   ||||||||||||||||| || |||| ||||||||||  || ||||| ||||||    
T  18705622 cataagggtagtgaagggtttgtgtttatttt--ctgttttcatgatcttttgataaattgatgttaaattcatgttctaaattgttg 18705707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 3593163 - 3592994
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatgggg-gagtctctattca-cataagggttttatgaacat 112  Q
    ||||| ||||||  |||||||||| || ||| ||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||| ||||| |||    
T  3593163 gagaataacctatggagagatttctccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcat 3593064  T
Q  113 atgggtagtgaagggcttgttttcttttaattg-ttttcatgatcttttaatgaattcatgttaaatttgtg 183  Q
    | | |||||| |||| || | |  |||  |||| ||||||||||||||||||||||||||||||||||||||    
T  3593063 acgtgtagtgcagggtttatgt--tttacattgtttttcatgatcttttaatgaattcatgttaaatttgtg 3592994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 18534434 - 18534549
Alignment:
Q  26 agagagagatttcaccatagaaaatcatcaattctgcaaa-ctagaggtatgggggagtctctattca-cataagggttttatgaacatatgggtagtga 123  Q
    |||||||||||  ||||||| ||||||||||||  ||||| ||||||||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||    
T  18534434 agagagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataaggattgtatgaacatat-ggtagtga 18534532  T
Q  124 agggcttgttttctttt 140  Q
    |||| || |||| ||||    
T  18534533 agggttttttttttttt 18534549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 3262264 - 3262442
Alignment:
Q  25 tagagagagatttcaccatagaaaatcatca-attctgcaaactagaggtatgggggagtctctattcac-ataagggttttatgaacatatgggtagtg 122  Q
    ||||||||||||||| | ||| ||||||| | |||||  |||||| ||||| ||| | |||||||||||| |||||| || |||||||||||||||||||    
T  3262264 tagagagagatttcatcgtaggaaatcattagattctataaacta-aggtaagggagcgtctctattcaccataaggattgtatgaacatatgggtagtg 3262362  T
Q  123 aaggg-cttgttttcttttaattgttttcatgatctttt-aatgaattcatgttaaatttgtgctctaatttgttgttgt 200  Q
    |||||  |||||||   ||| || |||| ||||| |||| ||||||||||||| |||||  |||||||||||| ||||||    
T  3262363 aagggttttgtttttcattatttttttttatgattttttcaatgaattcatgtcaaattcatgctctaatttgatgttgt 3262442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 24177926 - 24178025
Alignment:
Q  76 gggggagtctctattcac-ataagggttttatgaacatatgggtagtgaagggcttgttttcttttaattg-ttttcatgatcttttaatgaattcatgt 173  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||||  | |||  |||  |||| ||||||||||||||||||||||||||||    
T  24177926 gggggagtctctattcaccataaggattctatgaacatatgggtagtgaaggg--tttttattttccattgtttttcatgatcttttaatgaattcatgt 24178023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 30993240 - 30993352
Alignment:
Q  16 agaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatggggg-agtctctattcac-ataagggttttatgaacat 112  Q
    |||||||||| |||||||| |||||  ||  || ||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  30993240 agaagaacctggagagagacttcactgtatgaattcatcaaattctccaaactagaggtaaggggggagtctctattcaccataagggttgtatgaacat 30993339  T
Q  113 atgggtagtgaag 125  Q
    |||||||| ||||    
T  30993340 atgggtagggaag 30993352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 3483706 - 3483604
Alignment:
Q  27 gagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatggg-ggagtctctattcacataagggttttatgaacatatgggtagtgaa 124  Q
    ||||||||| | | |||||||| ||||||| |||| ||||||||||||| ||| ||||||||| || ||||||||||| ||||| | |||||||||||||    
T  3483706 gagagagatattatcatagaaattcatcaaattctccaaactagaggtaagggaggagtctctgtttacataagggttgtatgatcgtatgggtagtgaa 3483607  T
Q  125 ggg 127  Q
    |||    
T  3483606 ggg 3483604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 32658705 - 32658576
Alignment:
Q  69 gaggtatgggggagtctctattcacataagggttttatgaacatatgggtagtgaagggcttg------ttttcttttaattgttttcatgatcttttaa 162  Q
    |||||| |||| ||||||||||||| |||||||| ||||||||||||  |||||||  | |||      ||||  |||  || |||||||||||||||||    
T  32658705 gaggtaaggggaagtctctattcacgtaagggttgtatgaacatatgattagtgaacagtttgcgttattttttatttttttattttcatgatcttttaa 32658606  T
Q  163 tgaattcatgttaaatttgtgctctaattt 192  Q
    ||||||||| ||||||| ||||||||||||    
T  32658605 tgaattcattttaaattcgtgctctaattt 32658576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 15777344 - 15777412
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatgggggagt 83  Q
    ||||||||||||||||||||||||||| ||| || | |||| || ||||||||||||||| ||||||||    
T  15777344 gagaagaacctagagagagatttcaccgtaggaatttatcacttttgcaaactagaggtaagggggagt 15777412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 3290723 - 3290608
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtatgggggagtctctattca----cataagggttttatgaa 109  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||||||  || |||||||| ||| |||||||||| ||||||    |||| ||| | ||||||    
T  3290723 gagaagaacctagagagggatttaaccgtaggaaatcatcaatttcgcaaaactaga-gtaagggggagtct-tattcatcatcataggggctgtatgaa 3290626  T
Q  110 catatgggtagtgaaggg 127  Q
    ||||||| ||||||||||    
T  3290625 catatggatagtgaaggg 3290608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 1935 - 1821
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatg-ggggagtctctattca-cataagggttttatgaacat 112  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |||||| ||    
T  1935 gagaagaacctacagagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggggagtctctatttaccataagggttgtatgaatat 1836  T
Q  113 atgggtagtgaaggg 127  Q
    || ||||| ||||||    
T  1835 ataggtagcgaaggg 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 25126238 - 25126416
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtat-gggggagtctctattcacataagggttttatgaacat 112  Q
    |||||||||||||||||| |||| | | ||| ||||||||||||  || ||||||||||||| |||||||||||||||  |||||||||| ||| |||||    
T  25126238 gagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatggggggagtctctatt--cataagggttgtataaacat 25126335  T
Q  113 atgggtagtgaagggcttgt-tttcttttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaattt 192  Q
    || |||||||||||  || | ||| | ||  |||||||| |||||||||||| |||||||||| |||| ||||||||||||    
T  25126336 ataggtagtgaaggatttatgtttttcttctttgttttcttgatcttttaataaattcatgttcaattcgtgctctaattt 25126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 19611924 - 19612046
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtat-gggggagtctctattcacataagggttttatgaacat 112  Q
    ||||||||||||||||||||||||| | |||  |||||||||||  || ||| ||||||||| |||||||||||||||||||||| ||||  ||||||||    
T  19611924 gagaagaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaattagaggtatggggggagtctctattcacataa-ggttgcatgaacat 19612022  T
Q  113 atgggtagtgaagggcttgttttc 136  Q
    || |||||||||||  ||||||||    
T  19612023 ataggtagtgaaggttttgttttc 19612046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 18552312 - 18552493
Alignment:
Q  12 agtgagaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggtatgggggagtctctattca-cataagggttttatgaa 109  Q
    |||||||||||||| |||||| |||||| ||||| || ||||| ||||  | |||||||| |||  ||||||||||| |||| |||||||||| |||||     
T  18552312 agtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaatggggagtctcttttcagcataagggttgtatgag 18552411  T
Q  110 catatgggtagtgaagggcttgttttcttttaattgtttt-catgatcttttaatgaattcatgttaaatttgtgctctaatttg 193  Q
    |||| ||||||||||| |  |||| | |||  |||||||| |||| |||||||| ||||||||||| |||| |||||||||||||    
T  18552412 catacgggtagtgaagag--tgttgt-tttatattgttttgcatgttcttttaacgaattcatgtttaattcgtgctctaatttg 18552493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 23974213 - 23974154
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaactagaggta 74  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  23974213 gagaagaacctagagaaagatttcaccgtaggaaatcatcaattctgcaaactagaggta 23974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 14645805 - 14645677
Alignment:
Q  50 tcatcaattctgcaaactagaggtatgggggagtctctattcacataagggttttatgaacatatgggtagtg-aagggcttgttttcttttaattgttt 148  Q
    |||||||||| | |||||||||||| ||||||||||||||||| |||| |||| ||||||||| ||||||||| ||||  |||||||   ||| || |||    
T  14645805 tcatcaattcggaaaactagaggtaagggggagtctctattcaaataa-ggttgtatgaacatctgggtagtgaaaggttttgttttgccttattttttt 14645707  T
Q  149 tcatgatcttttaatgaattcatgttaaat 178  Q
    | ||||| || ||||||||| |||||||||    
T  14645706 ttatgattttataatgaatttatgttaaat 14645677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 44277959 - 44278085
Alignment:
Q  77 ggggagtctctattcacataagggttttatgaacatatgggtagtgaagggcttgt---tttcttttaattgttttcatgatctttt-aatgaattcatg 172  Q
    ||||||||||| ||||||   ||||| |||||||||||||||||||||||| ||||   ||| ||||  ||||||  ||| | |||| ||||||||||||    
T  44277959 ggggagtctctcttcacagt-gggttatatgaacatatgggtagtgaagggtttgtgttttttttttctttgtttatatgttttttttaatgaattcatg 44278057  T
Q  173 ttaaatttgtgctctaatttgttgttgt 200  Q
    |||||||| | |||||||||||||||||    
T  44278058 ttaaatttatactctaatttgttgttgt 44278085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 11153891 - 11153814
Alignment:
Q  28 agagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggta-tgggggagtctctattca-cataagggtt 102  Q
    |||||||||||||| ||  || ||||||| |||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  11153891 agagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggtt 11153814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 15706773 - 15706660
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaa-ctagaggta-tgggggagtctctattca-cataagggttttatgaaca 111  Q
    |||||||| ||| || ||||||||| | ||  ||||||||||||  ||||| ||||||||| |||||||||||||||||| | |||| ||| ||||| ||    
T  15706773 gagaagaatctaaagggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggggagtctctattcaccgtaagagttgtatgatca 15706674  T
Q  112 tatgggtagtgaag 125  Q
     ||| |||||||||    
T  15706673 catgagtagtgaag 15706660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 40391465 - 40391280
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtatgggggagtctctattca-cataagggttttatgaacat 112  Q
    |||||||||||| |||||||||||| | ||||||| ||||||||  || |||||||||||| |||||||| | |||||| | |||||||| ||| |||||    
T  40391465 gagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagt-tttattcatcgtaagggttatataaacat 40391367  T
Q  113 atgggtagtgaagggcttgt-tttcttttaattgttttcatgatcttttaatgaatt--catgttaaatttgtgctctaatttgttg 196  Q
    ||| ||||||||||| |||| ||| | ||  |||||||| | |||||||||||||||   ||||||||||||||||||| |||||||    
T  40391366 atgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctctactttgttg 40391280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 17290715 - 17290600
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggt-atgggggagtctctattca-cataagggttttatgaaca 111  Q
    ||||||||||||||||||||||| ||| ||  |||| ||||| ||||  ||| ||||||| | ||||||||||||||||| |||||||||| |||||| |    
T  17290715 gagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaaggggggagtctctattcaccataagggttgtatgaata 17290616  T
Q  112 tatgggtagtgaaggg 127  Q
    ||||||| ||||||||    
T  17290615 tatgggttgtgaaggg 17290600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 42147470 - 42147389
Alignment:
Q  93 cataagggttttatgaacatatgggtagtgaagggcttgttttcttttaattgtttt-catgatcttttaatgaattcatgtta 175  Q
    |||||| ||| |||||||||||||||||||||||  || |||  |||| |||||||| ||||||||||||||||||||||||||    
T  42147470 cataagtgttgtatgaacatatgggtagtgaagg--ttttttatttttcattgtttttcatgatcttttaatgaattcatgtta 42147389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 42147506 - 42147468
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcat 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42147506 gagaagaacctagagagagatttcaccatagaaaatcat 42147468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 9883692 - 9883636
Alignment:
Q  47 aaatcatcaattctgcaaactagaggtatgggggagtctctattca-cataagggtt 102  Q
    |||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||    
T  9883692 aaatcatcaattctacaaactagaggtatgggggagtttctatttaccataagggtt 9883636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 6465791 - 6465713
Alignment:
Q  16 agaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggtatgggggagtctctattcac 93  Q
    |||||||||| ||||||||||| || ||||||| ||||| |||||| | |||||||||||   ||||||||||||||||    
T  6465791 agaagaacctggagagagattttactatagaaattcatcaaattctccgaactagaggtaaaagggagtctctattcac 6465713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 35497 - 35673
Alignment:
Q  20 gaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatggggg-agtctctattca-cataagggttttatgaacatatgg 116  Q
    |||| ||||||||||||||||| ||| || ||||||| |||  ||||||||||||| ||||| |||||||||||| | |||||||| ||| |||||||||    
T  35497 gaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattcagcgtaagggttgtatcaacatatgg 35596  T
Q  117 gtagtgaagggcttgttttctttta--attgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatt 191  Q
    |||||||| || ||  ||| |||||  ||| || | | |||||||||  ||||||||||||||||||||||||||||    
T  35597 gtagtgaaaggttttattttttttattatttttcttacgatcttttaccgaattcatgttaaatttgtgctctaatt 35673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 16093615 - 16093511
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaactagaggtatg-ggggagtctctattca-cataagggttttatgaacat 112  Q
    |||| |||||||||||||||||||||  |||||| |||||| || ||||||||||||||| | |||||||||||||||| |||||||||| ||| | |||    
T  16093615 gagaggaacctagagagagatttcactgtagaaattcatcacttttgcaaactagaggtaagaggggagtctctattcaccataagggttgtataatcat 16093516  T
Q  113 atggg 117  Q
    |||||    
T  16093515 atggg 16093511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 32623604 - 32623669
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggtatgggg 79  Q
    |||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||    
T  32623604 gagaagaatctagagagagatttcaccgtagaaaatcatcaattttgcaaaactagaggtaggggg 32623669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 27386940 - 27387000
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgc-aaactagaggta 74  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||||    
T  27386940 gagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggta 27387000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 4793 - 4709
Alignment:
Q  110 catatgggtagtgaagggcttgttttctt-ttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatttg 193  Q
    |||||||||||||||||| |||| || || ||  ||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  4793 catatgggtagtgaagggtttgtgtttttcttccttgttttcatgtttttttgatgaattcatgttaaatttgtgctctaatttg 4709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 171485 - 171558
Alignment:
Q  50 tcatcaattctgcaaactagaggtatgggggagtctctattcacataagggttttatgaacatatgggtagtgaa 124  Q
    |||||||||| | |||||||||||| ||||||||||||||||| |||| |||| ||||||||| |||||||||||    
T  171485 tcatcaattcggaaaactagaggtaagggggagtctctattcaaataa-ggttgtatgaacatctgggtagtgaa 171558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 48310 - 48232
Alignment:
Q  50 tcatcaattctgcaaactagaggtatggggg-agtctctattcac-ataagggttttatgaacatatgggtagtgaagg 126  Q
    |||||||||| | |||||||||||| ||||| ||||||||||||| |||||| || ||||| |||||||||||||||||    
T  48310 tcatcaattcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaagg 48232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 183034 - 182968
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggtatggggg 80  Q
    |||| |||| |||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  183034 gagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 39435961 - 39436039
Alignment:
Q  16 agaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatgggggagtctctattcac 93  Q
    ||||||| ||| |||||||||||||| ||| |||||||||| |||   |||||||||||| ||||||||||||||||||    
T  39435961 agaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagggggagtctctattcac 39436039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 39176519 - 39176442
Alignment:
Q  29 gagagatttcaccatagaaaatcatcaattctgc-aaactagaggt-atggggg-agtctctattca-cataagggtt 102  Q
    ||||||||||||||||||||||||||||||  || ||||||||||| ||||||| |||||||||||| ||||||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggtt 39176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 1352 - 1252
Alignment:
Q  99 ggttttatgaacatatgggtagtgaagggcttgttttcttttaattgttttcatgatcttttaatgaattcatgttaaatttgtgctctaatttgttgtt 198  Q
    |||| ||||| |||||||||||||||||  ||||| | || || |  ||||||||||||||||||||||| ||||  |||| |||||||| |||||||||    
T  1352 ggttgtatgaccatatgggtagtgaagga-ttgttgttttctattgtttttcatgatcttttaatgaattaatgtcgaattcgtgctctagtttgttgtt 1254  T
Q  199 gt 200  Q
    ||    
T  1253 gt 1252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 19769032 - 19769123
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatc-aattctgcaaactagaggta--tgggggagtctctattca-cataagggtt 102  Q
    |||||||| |||||||||||||||||| ||| || ||||| |||||| | |||||||||||   ||||||||||||||||| ||||||||||    
T  19769032 gagaagaatctagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggtt 19769123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 9548833 - 9548696
Alignment:
Q  28 agagagatttcaccatagaaaatcatcaattctgc--aaactagaggt-atgggggagtctctattca-cataagggttttatgaacatatgggtagtga 123  Q
    |||||||||||||| ||| ||||||||||||  ||  ||||||||| | | |||||||||||| |||| |||||||||| ||||| ||||| ||||||||    
T  9548833 agagagatttcaccgtaggaaatcatcaatttcgcaaaaactagagataaggggggagtctctgttcatcataagggttgtatgatcatat-ggtagtga 9548735  T
Q  124 ag-ggcttgttttcttttaattgttttcatgatcttttaat 163  Q
    || |  ||||||||||||  |  ||||||||||||||||||    
T  9548734 agagttttgttttctttt--tgtttttcatgatcttttaat 9548696  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 19566882 - 19566996
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaattctgcaaa-ctagaggtatggggg--agtctctattcac-ataagggttttatgaac 110  Q
    ||||||| | ||| ||||||||  ||| |||||| ||||| |||| ||||| ||||||| | |||||  ||||| ||||||| ||||||||| | |||||    
T  19566882 gagaagagcttagggagagattcaaccgtagaaattcatctattcagcaaaactagaggcaagggggggagtctgtattcaccataagggttgtgtgaac 19566981  T
Q  111 atatgggtagtgaag 125  Q
    |||||||||||||||    
T  19566982 atatgggtagtgaag 19566996  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 12987081 - 12987162
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtat--gggggagtctctattcac 93  Q
    ||||||||||||||||||||||||||| ||   ||||||||| |||   ||||||||| |||  ||||||||||||||||||    
T  12987081 gagaagaacctagagagagatttcaccgtatggaatcatcaatttcaaaaaactagagatatgggggggagtctctattcac 12987162  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 19892960 - 19892891
Alignment:
Q  15 gagaagaacctagagagagatttcaccatagaaaatcatcaa-ttctgcaaactagaggtatgggggagt 83  Q
    |||||||| ||||||||| |||||| | |||||| ||||||| |||| | ||||||||||| ||||||||    
T  19892960 gagaagaatctagagagaaatttcatcgtagaaattcatcaaattctccgaactagaggtaagggggagt 19892891  T

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Target: scaffold0323 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 16288 - 16222
Alignment:
Q  63 aaactagaggtatggggga-gtctctattcac-ataagggttttatgaacatatgggtagtgaaggg 127  Q
    |||||||||||| |||||| |||||||||||| | ||||||| ||||| ||| ||||||||||||||    
T  16288 aaactagaggtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaaggg 16222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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