View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_low_5 (Length: 497)
Name: NF14721_low_5
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 45307462 - 45307921
Alignment:
| Q |
18 |
aaggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaagccttgtaagaatattcattcctctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307462 |
aaggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaagccttgtaagaatattcattcctctt |
45307561 |
T |
|
| Q |
118 |
cattaatttgcaaagccaacaatatatataagtgatttttgtttgacattttttgtgttaattaattttcagattgtgaaagatggatatcagtggagaa |
217 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307562 |
cattaatttgcaaagccaacaatat----aagtgatttttgtttgacattttttgtgttaattaattttcagattgtgaaagatggatatcagtggagaa |
45307657 |
T |
|
| Q |
218 |
aatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtgaagaagaaagtgcaaagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307658 |
aatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtgaagaagaaagtgcaaagaag |
45307757 |
T |
|
| Q |
318 |
tgttgatgatccatcagttgtggttgcaacatatgaaggagagcataaccatcctcatccttcgcaaacggagccaacaaacaatcgttgtaggaaccaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45307758 |
tgttgatgatccatcagttgtggttgcaacatatgaaggagagcataaccatcctcatccttcgcaaaccgagccaacaaacaatcgttgtaggaaccaa |
45307857 |
T |
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| Q |
418 |
attagtccagtagcaccttcttcttctgcaccaagtacagttacacttgattggacaaagaaag |
481 |
Q |
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| T |
45307858 |
attagtccagtagcaccttcttcttctgcaccaagtacagttacacttgattggacaaagaaag |
45307921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 928311 - 928419
Alignment:
| Q |
183 |
ttttcagattgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgct |
282 |
Q |
| |
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||||||||||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| || | ||||||||| || ||||||||||| |||||| |
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| T |
928311 |
ttttcagattgtgaaggatggataccattggaggaaatatggacaaaaagtgaccagagataacccttgtccaagagcttatttcaaatgctcttttgct |
928410 |
T |
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| Q |
283 |
ccaagctgc |
291 |
Q |
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| T |
928411 |
ccaagctgc |
928419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 48925973 - 48925860
Alignment:
| Q |
192 |
tgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgc |
291 |
Q |
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|||||| |||||||||||||||||||||||||| || || || || || ||||| || ||||| || || |||||||| || || |||||||| ||||| |
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| T |
48925973 |
tgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggcttacttcaagtgttcctttgctcctggctgc |
48925874 |
T |
|
| Q |
292 |
acagtgaagaagaa |
305 |
Q |
| |
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| T |
48925873 |
cctgtgaagaagaa |
48925860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 3259078 - 3258972
Alignment:
| Q |
199 |
gatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtga |
298 |
Q |
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||||||||||| ||||| |||||||| || ||||| || || ||||| || ||||| ||||| || || | ||||||| ||||||||||||| |||| | |
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| T |
3259078 |
gatggatatcaatggaggaaatatggtcagaaggttactagagataacccctctcctagagcttattttaggtgctcatatgctccaagctgcccagtta |
3258979 |
T |
|
| Q |
299 |
agaagaa |
305 |
Q |
| |
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| ||||| |
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| T |
3258978 |
aaaagaa |
3258972 |
T |
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