View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_low_8 (Length: 357)
Name: NF14721_low_8
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 32207474 - 32207215
Alignment:
| Q |
1 |
agggaaaattagcaatgagagacgtaacttcaagaccataatcaaaattacactaaaaaggtcgcaagtattcacacaataatatgaaatgaaaccaata |
100 |
Q |
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| T |
32207474 |
agggaaaattagcaatgagagacgtaacttcaagaccataatcaaaattacactaaaaaggtcgcaagtattcacacaataatatgaaatgaaaccaata |
32207375 |
T |
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| Q |
101 |
gaatgttgcagagtcaaagaattgatagttcaacatcaggaagaaaaatatatatacaactaaaaataaacagcagagaaacaacttactgtaacgtatc |
200 |
Q |
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| T |
32207374 |
gaatgttgcagagtcaaagtattgatagttcaacatcaggaagaaaaaaatatatacaactaaaaataaacagcagagaaacaacttactgcaacgtatc |
32207275 |
T |
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| Q |
201 |
aacaacctgcccacgatccatcagaaactcacgtaactgtagagaagagaaggagtcgtt |
260 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
32207274 |
aacaacctgcccacgatccatcaggaactcccgtaactgtagagaagagaaggagtcgtt |
32207215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 32207183 - 32207137
Alignment:
| Q |
292 |
gcttctctgctgagcttgactctaaactgggtaaatatggttcatca |
338 |
Q |
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| T |
32207183 |
gcttctctgctgagcttgactctaaactgggtaaatatggtgcatca |
32207137 |
T |
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