View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14721_low_9 (Length: 340)
Name: NF14721_low_9
Description: NF14721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14721_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 55263300 - 55262966
Alignment:
| Q |
1 |
tcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaattaatagaaacacatgtttt----tgttgcatgtc |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
55263300 |
tcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaat----agaaacacatgttttaatttgttgcatgtc |
55263205 |
T |
|
| Q |
97 |
ctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263204 |
ctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaa |
55263105 |
T |
|
| Q |
197 |
ctgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
55263104 |
ctgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagctttcttcgtgtttatgtaccattgatggtaaaatatgtttc |
55263005 |
T |
|
| Q |
297 |
atgtgtctataacagattgccattggtactgatgatgtc |
335 |
Q |
| |
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| T |
55263004 |
atgtgtctataacagattgccattggtactgatgatgtc |
55262966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 55270164 - 55269830
Alignment:
| Q |
1 |
tcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaattaatagaaacacatgtttt----tgttgcatgtc |
96 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
55270164 |
tcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaat----agaaacacatgttttaatttgttgcatgtc |
55270069 |
T |
|
| Q |
97 |
ctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270068 |
ctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaa |
55269969 |
T |
|
| Q |
197 |
ctgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttc |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| | | ||||||||||||||||| |
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| T |
55269968 |
ctgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttc |
55269869 |
T |
|
| Q |
297 |
atgtgtctataacagattgccattggtactgatgatgtc |
335 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
55269868 |
atgtgtctatgacagattgctgttggtactgatgatgtc |
55269830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
98 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
197 |
Q |
| |
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||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
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| Q |
198 |
tgcttatgcacaggttagtt |
217 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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