View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14722_low_1 (Length: 611)
Name: NF14722_low_1
Description: NF14722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14722_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 181 - 510
Target Start/End: Complemental strand, 21148307 - 21147978
Alignment:
| Q |
181 |
gcatagttcggtaaagaaattttatcagaatgagtaaaaaacggatatattagacaaactaaatagagacaaaatgaagcaaagagagcagnnnnnnnta |
280 |
Q |
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| T |
21148307 |
gcatagttcggtaaagaaattttatcagaatgagtataaaacggatatattagacaaactaaatagagacaaaatgaagcaaagagagcagaaaaaaata |
21148208 |
T |
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| Q |
281 |
atcagaacaagtagcactctcaatgacacgaatcggtaaatataaaggtcataaaattagcatatgaagataagcaatgccatactccatatgaaaggag |
380 |
Q |
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| T |
21148207 |
atcagaacaagtagcaccctcaatgacacgaatccgtaaataaaaaggtcgtaaaattagcatatgaagataagcaatgccatactccatatgaaaggag |
21148108 |
T |
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| Q |
381 |
aaaaagcaaataaaagaacaatttgaatgctatgaacaagtaaataaaagacttaacgacacttttgacgccaaatatcgcaactgtgtaaatttagcct |
480 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
21148107 |
aaaaagtaaataaaagaacaatttgaatgctatgaacaagtaaataaaagacttaacgacacttttgacgccaaatatcacaactgtgtaaatttggcct |
21148008 |
T |
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| Q |
481 |
cccattttgactctatcttttcccgctatg |
510 |
Q |
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| T |
21148007 |
cccgttttgactctatcttttcccgctatg |
21147978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 21148633 - 21148452
Alignment:
| Q |
1 |
aaataagggatacaaagaaacattcctcacatggggatcaatccttgaggattgacaaaccttgagagtccaacagtcgcaatgcactacaatccgtagt |
100 |
Q |
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| T |
21148633 |
aaataaggtatacaaagcaacattcctcacatggggatcaatccttgaggattgacaaaccttgagagtccaacattcgcaatgcactacaatccgtagt |
21148534 |
T |
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| Q |
101 |
ttcaaattgcggaccacataatgcgattggccacaatagtgtgggtttgacaatgtccgcacccgcatcaggacgcaattgc |
182 |
Q |
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| T |
21148533 |
ttcaaattgcggaccacataacacgatcggccacaatagtgtgggtttgacaatgtccgcacccgcatcaggccgcaattgc |
21148452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 508 - 596
Target Start/End: Complemental strand, 21147670 - 21147582
Alignment:
| Q |
508 |
atgcaaaacatgcaaccaaaactattcacttgcatggttatacttttgctcatgtgtactggttttgaagatcaatagagagaggaaga |
596 |
Q |
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| T |
21147670 |
atgcaaaacatgcaaccaaaactattcacttgcatggttatacttttgctcatgtgtactggttttgaagatcaatagagagaggaaga |
21147582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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