View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14722_low_3 (Length: 391)
Name: NF14722_low_3
Description: NF14722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14722_low_3 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 48 - 391
Target Start/End: Original strand, 14125189 - 14125532
Alignment:
| Q |
48 |
tcttaatatatatcattatatttaattaatttagcttctcaaattaatgcatgtgtcgacatatcaatataatatcgagtgtccatgtctgtgttagtgc |
147 |
Q |
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| T |
14125189 |
tcttaatatatatcattatatttaattaatttagcttctcaaattaatgcatgtgtcgacatgtcaatataatatcgagtgtccatgtctatgttagtgc |
14125288 |
T |
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| Q |
148 |
tacaaagtctattaaccatgatatgcttattgaagtggctatgtcaatgtatgttgctaggctctacaatttttattactaataacttggtatcatgaaa |
247 |
Q |
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| T |
14125289 |
tacaaagtctattaactactatatgcttattgaagtggctatgtcaatgtatgttgctaggctctacaaattttattactaataacttggtattatgaaa |
14125388 |
T |
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| Q |
248 |
ttctgatcctaaatgttggttttcttccatacagttttcttccaaaatggtaattttgagcagcaaccaaacccaaaatacataaagaaaacaagactca |
347 |
Q |
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| T |
14125389 |
ttctgatccaaaatgttggttttcttccttaaagttttcttccaaaatgggaactttgagcagcaaccaaacccaaaatacataaagaaaacaagactca |
14125488 |
T |
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| Q |
348 |
ttgggaaacatgcacttcccaaatgggaaaccagtggtctagtt |
391 |
Q |
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| T |
14125489 |
ttgggaaacatgcacttcccaaatgggaaaccagtggtctagtt |
14125532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 14129253 - 14129381
Alignment:
| Q |
263 |
ttggttttcttccatacagttttcttccaaaatggtaattttgagcagcaaccaaacccaaaatacataaagaaaacaagactcattgggaaacatgcac |
362 |
Q |
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| T |
14129253 |
ttggttttcttccttaaagttttcttccgaaatgggaactttgagcagcaaccgaacccgggttacataaagcaaacaagactcatggggaaacatgcac |
14129352 |
T |
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| Q |
363 |
ttcccaaatgggaaaccagtggtctagtt |
391 |
Q |
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| T |
14129353 |
ttcccaattgggaaaccaatggtctagtt |
14129381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14125167 - 14125116
Alignment:
| Q |
1 |
cgtatacaccttcaatctacaggtgtaggtagataaggctcttctactctta |
52 |
Q |
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| T |
14125167 |
cgtatacaccttcaatctacaggtgtaggtagataaggctcttctactctta |
14125116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 14112373 - 14112483
Alignment:
| Q |
280 |
agttttcttccaaaatggtaattttgagcagcaaccaaacccaaaatacataaagaaaacaagactcattgggaaacatgcacttcccaaatgggaaacc |
379 |
Q |
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| T |
14112373 |
agtttactttcaaaatgggaactttgaagagaagccaaacccaagattcataaaggaaacaagactcattggaaaacattcacttcccaaatgggaaatc |
14112472 |
T |
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| Q |
380 |
agtggtctagt |
390 |
Q |
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| T |
14112473 |
aatggtctagt |
14112483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 14129053 - 14129160
Alignment:
| Q |
88 |
aaattaatgcatgtgtcgacatatcaatataatatcgagtgtccatgtctgtgttagtgctacaaagtctattaaccatgatatgcttattgaagtggct |
187 |
Q |
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| T |
14129053 |
aaattattgcatgtgtttacaagtaaatataatgtcgggtgtctgtgtatgtgttcgtcctacagagtctattagctatgatgtgcttattgaagttgct |
14129152 |
T |
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| Q |
188 |
atgtcaat |
195 |
Q |
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| T |
14129153 |
acgtcaat |
14129160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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