View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14722_low_5 (Length: 307)
Name: NF14722_low_5
Description: NF14722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14722_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 1869551 - 1869849
Alignment:
| Q |
1 |
gcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtggg |
100 |
Q |
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| T |
1869551 |
gcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtggg |
1869650 |
T |
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| Q |
101 |
tcagtattttgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatc |
200 |
Q |
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| T |
1869651 |
tcagtattttgagcaagatacccttttgtttctcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtattatc |
1869750 |
T |
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| Q |
201 |
acttgttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttctgc |
299 |
Q |
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| T |
1869751 |
acctgttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgc |
1869849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 1916736 - 1916910
Alignment:
| Q |
21 |
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
120 |
Q |
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| T |
1916736 |
gatggtgatgtcaaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaata |
1916835 |
T |
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| Q |
121 |
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta |
195 |
Q |
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| T |
1916836 |
ccattttgtttctcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta |
1916910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 1916916 - 1916988
Alignment:
| Q |
225 |
tgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
297 |
Q |
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| T |
1916916 |
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttct |
1916988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 17488418 - 17488694
Alignment:
| Q |
21 |
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
120 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
17488418 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17488517 |
T |
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| Q |
121 |
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtact |
220 |
Q |
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| T |
17488518 |
ccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtact |
17488617 |
T |
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| Q |
221 |
catctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
297 |
Q |
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| T |
17488618 |
catctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17488694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 17564796 - 17564520
Alignment:
| Q |
21 |
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
120 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
17564796 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17564697 |
T |
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| Q |
121 |
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtact |
220 |
Q |
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| T |
17564696 |
ccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtact |
17564597 |
T |
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| Q |
221 |
catctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
17564596 |
catctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17564520 |
T |
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