View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14722_low_6 (Length: 274)
Name: NF14722_low_6
Description: NF14722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14722_low_6 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 12439078 - 12438834
Alignment:
| Q |
14 |
agacaggtggagatggaagtcttttatcctatcttttgaatctcaatattcatgtatctcctaaccgtgatggatttcatttgacaaccaacaacattaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12439078 |
agacaggtggagatggaagtcttttatcctatcttttgaatctcaatattcatgcatctcctaaccgtgatggatttcatttgacaaccaacaacattaa |
12438979 |
T |
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| Q |
114 |
agctgttattcaggttaattagtttaannnnnnnnctttacaattttaattactttcttaagatatttatttcgggtnnnnnnngtacttcctcaaatat |
213 |
Q |
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| T |
12438978 |
agctgttattcaggttaattagtttaattttttttctttacaatgttaattactttcttaagatatttatttcgggtaaaaaaagtacttcctcaaatat |
12438879 |
T |
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| Q |
214 |
aattaataaaaatgttttaataaatgatacatagagggagatact |
258 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12438878 |
aattaataaaaatgttttaataaatgatacataaagggagatact |
12438834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 2432415 - 2432525
Alignment:
| Q |
21 |
tggagatggaagtcttttatcctatcttttgaatctcaatattcatgtatctcctaaccgtgatggatttcatttgacaaccaacaacattaaagctgtt |
120 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| ||||| ||| | |||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2432415 |
tggagatggaagtcttttgtcctatcttttgagtctcaatgatcatggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgtt |
2432514 |
T |
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| Q |
121 |
attcaggttaa |
131 |
Q |
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| T |
2432515 |
attcaggttaa |
2432525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 41646401 - 41646507
Alignment:
| Q |
24 |
agatggaagtcttttatcctatcttttgaatctcaatattcatgtatctcctaaccgtgatggatttcatttgacaaccaacaacattaaagctgttatt |
123 |
Q |
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||||||||||||||| |||||||||||||||||||| | ||| ||| |||| | ||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
41646401 |
agatggaagtcttttgtcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttatt |
41646500 |
T |
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| Q |
124 |
caggtta |
130 |
Q |
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||||||| |
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| T |
41646501 |
caggtta |
41646507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 41653603 - 41653706
Alignment:
| Q |
24 |
agatggaagtcttttatcctatcttttgaatctcaatattcatgtatctcctaaccgtgatggatttcatttgacaaccaacaacattaaagctgttatt |
123 |
Q |
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||||||||||||||| |||||||||||||||||||| | ||| || |||| | |||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
41653603 |
agatggaagtcttttgtcctatcttttgaatctcaaacatgatg---cttctaatcctgatggatttcatttgacaatcaacaacattaaagccgttatt |
41653699 |
T |
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| Q |
124 |
caggtta |
130 |
Q |
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||||||| |
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| T |
41653700 |
caggtta |
41653706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 5023060 - 5022947
Alignment:
| Q |
21 |
tggagatggaagtcttttatcctatcttttgaatctcaatattcatgtatctcctaaccgtgatggatttcatttgacaaccaacaacattaaagctgtt |
120 |
Q |
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||||||||||||||| | |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||| |||||||| || |
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| T |
5023060 |
tggagatggaagtctactgtcctatcttttgaatctcaaagacgatggctctcctaacccgattggatttcatttgacaatcaacaatattaaagccatt |
5022961 |
T |
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| Q |
121 |
attcaggttaatta |
134 |
Q |
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| T |
5022960 |
atccaggttaatta |
5022947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 55363 - 55395
Alignment:
| Q |
211 |
tataattaataaaaatgttttaataaatgatac |
243 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
55363 |
tataattaataagaatgttttaataaatgatac |
55395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 15057468 - 15057500
Alignment:
| Q |
211 |
tataattaataaaaatgttttaataaatgatac |
243 |
Q |
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| T |
15057468 |
tataattaataaaaatgttttaatatatgatac |
15057500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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