View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14722_low_8 (Length: 245)
Name: NF14722_low_8
Description: NF14722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14722_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 971554 - 971779
Alignment:
| Q |
4 |
agggtaggacctttttgattctatttgcaattggctttgtaatgattttaagaattacattacaaagggcaattggtctgaagtcagaaggtaaagtagg |
103 |
Q |
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| T |
971554 |
agggtatgacctttttgattctatttgcaattgtctttataatgattataagaattacattacaaagggcaattggtctgaagtcagaaggtaaagtaga |
971653 |
T |
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| Q |
104 |
ttttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaatattaagggcatactcaataatctcagta |
203 |
Q |
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| T |
971654 |
ttttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaacattaagggcatactcaataatctcagta |
971753 |
T |
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| Q |
204 |
ccaatttctgcccaataggattgata |
229 |
Q |
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| T |
971754 |
ccaatttctgcccaataggattgata |
971779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 43136591 - 43136749
Alignment:
| Q |
23 |
tctatttgcaattggctttgtaatgattttaagaattacattacaaagggcaattggtctgaagtcagaaggtaaagtaggttttttaaccttaggaata |
122 |
Q |
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| T |
43136591 |
tctatttgcaattgttttagtaataattttaaaaagaacattacatagagcaataggtatataatcagaaggtaaagtagggtttttgattttaggtata |
43136690 |
T |
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| Q |
123 |
agacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaatattaag |
181 |
Q |
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| T |
43136691 |
agacagagaagagtgtggttgatattaccaatatcacaattgtgatttagaatattaag |
43136749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 6523221 - 6523064
Alignment:
| Q |
72 |
gcaattggtctgaagtcagaaggtaaagtaggttttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaa |
171 |
Q |
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| T |
6523221 |
gcaataggtctgtaatctgaaggtaaagaaggatgttttattttaggaataagacaaaggtgagtgtgattgatattaccaggatccccattatggttaa |
6523122 |
T |
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| Q |
172 |
gaatattaagggcatactcaataatctcagtaccaatttctgcccaataggattgata |
229 |
Q |
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| T |
6523121 |
ggattttaaggacataatcagtgatatcattaccaatgacctcccaataagattgata |
6523064 |
T |
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