View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_high_13 (Length: 439)

Name: NF14723_high_13
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_high_13
NF14723_high_13
[»] chr2 (5 HSPs)
chr2 (1-186)||(44474140-44474324)
chr2 (347-422)||(44474401-44474477)
chr2 (384-420)||(44470420-44470456)
chr2 (172-217)||(30929058-30929103)
chr2 (174-218)||(11764386-11764430)
[»] chr7 (2 HSPs)
chr7 (160-219)||(24614696-24614755)
chr7 (181-219)||(1285091-1285129)
[»] chr1 (1 HSPs)
chr1 (171-219)||(4770640-4770688)
[»] chr6 (1 HSPs)
chr6 (162-221)||(21941462-21941521)
[»] chr3 (2 HSPs)
chr3 (180-219)||(48517672-48517711)
chr3 (166-219)||(7827509-7827562)
[»] chr8 (2 HSPs)
chr8 (161-215)||(3757959-3758013)
chr8 (181-217)||(38489224-38489260)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 44474140 - 44474324
Alignment:
Q  1 attagtctgtgatctttcggtaaagcaaaagaattagtgaattgcattcctaccacaccaataggaaagttgttcttccatgaagccaataagtttattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||    
T  44474140 attagtctgtgatctttcggtaaagcaaa-gaattagtgaattgcattcctaccacaccaattggcaatttgttcttccatgaagccaataagtttattt 44474238  T
Q  101 atttttatatgaatgaaggcattatagcgttgaaagacatatatttattttggagtcaagatttaaactccagatcttatatatat 186  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||  || | ||||| |||||| |||||| |||||||    
T  44474239 atttttatatgaatgaaggcattatagtgtcgaaagacatatatttattttgtggtaaggatttgaactccggatcttttatatat 44474324  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 44474401 - 44474477
Alignment:
Q  347 atgtttgggaagtccatattagatactaataa-ccaattaaaccatgaattctcttaccttaatcttcacattcttc 422  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44474401 atgtttgggaagtccatattagatactaataaaccaattaaaccatgaattctcttaccttaatcttcacattcttc 44474477  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 44470420 - 44470456
Alignment:
Q  384 taaaccatgaattctcttaccttaatcttcacattct 420  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44470420 taaaccatgaaatctcttaccttaatcttcacattct 44470456  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 30929058 - 30929103
Alignment:
Q  172 agatcttatatatatcatgcattgatcctatcaactgagttaaact 217  Q
    ||||||||||||||| ||||||||  | ||||||||||||||||||    
T  30929058 agatcttatatatattatgcattgtccatatcaactgagttaaact 30929103  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 11764430 - 11764386
Alignment:
Q  174 atcttatatatatcatgcattgatcctatcaactgagttaaactc 218  Q
    ||||||||||||| |||||||  || |||||||||||||||||||    
T  11764430 atcttatatatattatgcattattcttatcaactgagttaaactc 11764386  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 24614755 - 24614696
Alignment:
Q  160 gatttaaactccagatcttatatatatcatgcattgatcctatcaactgagttaaactca 219  Q
    ||||| |||||||||  |||||||||| |||||||  |||||||||||||||||||||||    
T  24614755 gatttgaactccagacattatatatattatgcattattcctatcaactgagttaaactca 24614696  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 1285091 - 1285129
Alignment:
Q  181 atatatcatgcattgatcctatcaactgagttaaactca 219  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  1285091 atatattatgcattgttcctatcaactgagttaaactca 1285129  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 4770640 - 4770688
Alignment:
Q  171 cagatcttatatatatcatgcattgatcctatcaactgagttaaactca 219  Q
    |||| |||||||||||||||||||| || ||||||||||||||| ||||    
T  4770640 cagaccttatatatatcatgcattgttcatatcaactgagttaagctca 4770688  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 21941462 - 21941521
Alignment:
Q  162 tttaaactccagatcttatatatatcatgcattgatcctatcaactgagttaaactcaga 221  Q
    ||||||||||||| |||| |||||| | ||||||  ||||||||||||||||| ||||||    
T  21941462 tttaaactccagaccttacatatattacgcattgtccctatcaactgagttaagctcaga 21941521  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 48517711 - 48517672
Alignment:
Q  180 tatatatcatgcattgatcctatcaactgagttaaactca 219  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  48517711 tatatattatgcattgttcctatcaactgagttaaactca 48517672  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 7827562 - 7827509
Alignment:
Q  166 aactccagatcttatatatatcatgcattgatcctatcaactgagttaaactca 219  Q
    ||||||||| |||| |||||| ||||||||  | ||||||||||||||||||||    
T  7827562 aactccagaccttacatatattatgcattgtccatatcaactgagttaaactca 7827509  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 3757959 - 3758013
Alignment:
Q  161 atttaaactccagatcttatatatatcatgcattgatcctatcaactgagttaaa 215  Q
    |||| ||| |||||||||| |||||| |||||||| |||||||||||||| ||||    
T  3757959 atttgaaccccagatcttacatatattatgcattgttcctatcaactgagctaaa 3758013  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 38489224 - 38489260
Alignment:
Q  181 atatatcatgcattgatcctatcaactgagttaaact 217  Q
    ||||||||||||||| || ||||||||||||||||||    
T  38489224 atatatcatgcattgttcttatcaactgagttaaact 38489260  T

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