View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_high_19 (Length: 335)
Name: NF14723_high_19
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 15179841 - 15180153
Alignment:
| Q |
18 |
aatttatgtggaaaatttgattgtttgattgatcttgagctacctacctgtgcagtactgcagtgcagattttaacgaatactggaattgaatgtagctc |
117 |
Q |
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| T |
15179841 |
aatttatgtggaaaatttgattgtttgattgatcttgagctacctacctgtgcagtactgcagtgcagattttaacgaatactggaattgaatgtagctc |
15179940 |
T |
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| Q |
118 |
tcccacactagcatctgctatgcttgaccttctcccagcttttaccttcatacttgctttaatttcaaggtttgacttattttatttatcttctatttac |
217 |
Q |
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| T |
15179941 |
tcccacactagcatctgctatgcttgaccttctccctgcttttaccttcatacttgctttaatttcaaggtttgacttattttatttatcttctatttac |
15180040 |
T |
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| Q |
218 |
gtgtaatttacgatttgtgaaattttaaagttatacccaagtcatagatgttagtggaagatctaaccataacggatgtggcaattgtatttggtaaagt |
317 |
Q |
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| T |
15180041 |
gtgtaatttacgagttgtgaaattttgaagttatacccaagtcatagatgttagtggaaggtctaaccatatcggatgtggcaattgtatttggtaaagt |
15180140 |
T |
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| Q |
318 |
ctttcatctcact |
330 |
Q |
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| T |
15180141 |
ctttcatgtcact |
15180153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 15189565 - 15189688
Alignment:
| Q |
66 |
tgtgcagtactgcagtgcagattttaacgaatactggaattgaatgtagctctcccacactagcatctgctatgcttgaccttctcccagcttttacctt |
165 |
Q |
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| T |
15189565 |
tgtgcagtactgcagtgcagattttaatgaatactggaattggatatagctctcccacattggcatctgctatggttgaccttgtccctgctttcacgtt |
15189664 |
T |
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| Q |
166 |
catacttgctttaatttcaaggtt |
189 |
Q |
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| T |
15189665 |
catacttgctgtaatttcaaggtt |
15189688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 15201610 - 15201648
Alignment:
| Q |
150 |
tcccagcttttaccttcatacttgctttaatttcaaggt |
188 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
15201610 |
tccctgcttttaccttcatacttgctataatttcaaggt |
15201648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 15208557 - 15208595
Alignment:
| Q |
150 |
tcccagcttttaccttcatacttgctttaatttcaaggt |
188 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
15208557 |
tccctgcttttaccttcatacttgctataatttcaaggt |
15208595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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